BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,129,397	Δ11,591 bp		flgN–flgL	flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1129397	1140987	11591	108 [0]	[0] 110	flgN–flgL	flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1129396	0 (0.000)	107 (0.940)	66/98	0.0	100%	intergenic (+22/+18)	murJ/flgN	putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN
*	?	NC_000913	1140988 =	0 (0.000)	107 (0.940)	66/98	0.0	100%	intergenic (+2/+194)	flgL/rne	flagellar hook‑filament junction protein 2/ribonuclease E

Only 100 of 110 total aligned reads displayed.

GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT  >  NC_000913/1140939‑1141037

aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt                                                   >  1:3862873‑M2/50‑50 (MQ=255)

aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt                                                   >  1:1245464‑M2/50‑50 (MQ=255)

 aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt                                                  >  1:4520022‑M2/49‑50 (MQ=255)

 aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt                                                  <  1:5193944‑M2/2‑1 (MQ=255)

 aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt                                                   <  1:861532‑M2/1‑1 (MQ=255)

 aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt                                                   <  1:4267394‑M2/1‑1 (MQ=255)

  agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc                                                 <  1:6533225‑M2/3‑1 (MQ=255)

  agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc                                                 <  1:4022824‑M2/3‑1 (MQ=255)

  agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc                                                 <  1:8179349‑M2/3‑1 (MQ=255)

   gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg                                                <  1:6389338‑M2/4‑1 (MQ=255)

     atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt                                              >  1:1002009‑M2/45‑50 (MQ=255)

      tttgcccgccggacggtgtaacaatgcattccggcctgcagttTTCGCtt                                             >  1:663970‑M2/44‑50 (MQ=255)

      tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt                                             >  1:4420616‑M2/44‑50 (MQ=255)

       ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt                                             >  1:2267446‑M2/43‑49 (MQ=255)

       ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt                                             >  1:3583186‑M2/43‑49 (MQ=255)

        tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt                                            >  1:5317428‑M2/42‑49 (MQ=255)

        tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt                                            <  1:1790350‑M2/8‑1 (MQ=255)

          cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa                                         <  1:7649722‑M2/11‑1 (MQ=255)

          cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa                                          >  1:7070453‑M2/40‑49 (MQ=255)

          cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa                                          >  1:6128897‑M2/40‑49 (MQ=255)

          cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa                                          <  1:2982075‑M2/10‑1 (MQ=255)

          cccgccggacggtgtaacaatgcattccggcctacagtgTTCGCTTTaaa                                         <  1:3850228‑M2/11‑1 (MQ=255)

            cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa                                        >  1:362597‑M2/38‑49 (MQ=255)

            cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAAc                                       <  1:4397845‑M2/13‑1 (MQ=255)

             gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa                                      >  1:4734652‑M2/37‑50 (MQ=255)

              ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat                                     <  1:7769436‑M2/15‑1 (MQ=255)

              ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa                                      >  1:4980910‑M2/36‑49 (MQ=255)

              ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa                                      >  1:2397837‑M2/36‑49 (MQ=255)

                ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat                                   >  1:3501221‑M2/34‑50 (MQ=255)

                ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat                                   <  1:293000‑M2/17‑1 (MQ=255)

                ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat                                   >  1:397721‑M2/34‑50 (MQ=255)

                 gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat                                   >  1:3241224‑M2/33‑49 (MQ=255)

                 gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat                                   >  1:5562818‑M2/33‑49 (MQ=255)

                 gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc                                  <  1:259809‑M2/18‑1 (MQ=255)

                  acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa                                 >  1:4921473‑M2/32‑50 (MQ=255)

                  acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa                                 <  1:8315177‑M2/19‑1 (MQ=255)

                   cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt                                <  1:5315819‑M2/20‑1 (MQ=255)

                   cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt                                <  1:2170046‑M2/20‑1 (MQ=255)

                    ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt                                >  1:7049221‑M2/30‑49 (MQ=255)

                    ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt                                >  1:6106726‑M2/30‑49 (MQ=255)

                      tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa                             <  1:1149836‑M2/23‑1 (MQ=255)

                      tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa                             <  1:1566996‑M2/23‑1 (MQ=255)

                      tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa                              >  1:5886541‑M2/28‑49 (MQ=255)

                       gtaacaatgcattccggcctgcagttTTCTCTTTAAAACATATCATGaaa                            >  1:827073‑M2/27‑50 (MQ=255)

                        taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa                            <  1:7711363‑M2/24‑1 (MQ=255)

                        taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc                           <  1:6646821‑M2/25‑1 (MQ=255)

                        taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc                           >  1:2079622‑M2/26‑50 (MQ=255)

                         aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt                          >  1:2845360‑M2/25‑50 (MQ=255)

                          acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt                          <  1:6390891‑M2/26‑1 (MQ=255)

                           caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg                        <  1:2675025‑M2/28‑1 (MQ=255)

                           caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg                        <  1:6491460‑M2/28‑1 (MQ=255)

                            aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg                       >  1:2957321‑M2/22‑50 (MQ=255)

                             atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg                       >  1:2014599‑M2/21‑49 (MQ=255)

                             atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg                       >  1:1047851‑M2/21‑49 (MQ=255)

                              tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa                     <  1:1468565‑M2/31‑1 (MQ=255)

                              tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa                     <  1:5567655‑M2/31‑1 (MQ=255)

                              tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa                     <  1:3960172‑M2/31‑1 (MQ=255)

                              tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa                     <  1:8432771‑M2/31‑1 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt                    <  1:6555673‑M2/32‑1 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt                    <  1:3259082‑M2/32‑1 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg                   <  1:7026512‑M2/33‑1 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg                   >  1:8294478‑M2/18‑50 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg                   <  1:266952‑M2/33‑1 (MQ=255)

                                cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg                   >  1:6523399‑M2/18‑50 (MQ=255)

                                 attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt                  <  1:7163415‑M2/34‑1 (MQ=255)

                                 attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt                  <  1:1446490‑M2/34‑1 (MQ=255)

                                  ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt                 <  1:4914619‑M2/35‑1 (MQ=255)

                                  ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt                 >  1:4534621‑M2/16‑50 (MQ=255)

                                    ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGTTATGttt                <  1:7382263‑M2/36‑1 (MQ=255)

                                    ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt               >  1:6190411‑M2/14‑50 (MQ=255)

                                    ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt                <  1:2572595‑M2/36‑1 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt               <  1:5748349‑M2/37‑1 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt               <  1:4431216‑M2/37‑1 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt               <  1:6046926‑M2/37‑1 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg              <  1:5377526‑M2/38‑1 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg              >  1:8305754‑M2/13‑50 (MQ=255)

                                     cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg              >  1:474589‑M2/13‑50 (MQ=255)

                                      ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt             <  1:1222591‑M2/39‑1 (MQ=255)

                                      ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt             >  1:1426441‑M2/12‑50 (MQ=255)

                                        cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct           >  1:6856580‑M2/10‑50 (MQ=255)

                                        cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct           >  1:3341668‑M2/10‑50 (MQ=255)

                                        cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct           >  1:8496840‑M2/10‑50 (MQ=255)

                                        cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct           >  1:6833253‑M2/10‑50 (MQ=255)

                                         ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg          <  1:1333379‑M2/42‑1 (MQ=255)

                                         ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg          <  1:7075922‑M2/42‑1 (MQ=255)

                                         ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg          <  1:3228620‑M2/42‑1 (MQ=255)

                                         ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg          <  1:8078115‑M2/42‑1 (MQ=255)

                                          tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc         >  1:3255614‑M2/8‑50 (MQ=255)

                                           gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc        >  1:6319262‑M2/7‑50 (MQ=255)

                                            cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct       >  1:6164129‑M2/6‑50 (MQ=255)

                                            cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc        <  1:397846‑M2/44‑1 (MQ=255)

                                            cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc        <  1:2660826‑M2/44‑1 (MQ=255)

                                            cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc         <  1:622008‑M2/43‑1 (MQ=255)

                                             agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg      >  1:4136000‑M2/5‑50 (MQ=255)

                                              gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc     >  1:4795924‑M2/4‑50 (MQ=255)

                                               tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct    <  1:220240‑M2/48‑1 (MQ=255)

                                               tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct    >  1:4677196‑M2/3‑50 (MQ=255)

                                                gTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc   >  1:7590872‑M2/2‑50 (MQ=255)

                                                 ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct  >  1:4190114/1‑50 (MQ=255)

                                                 ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc   <  1:4489843/49‑1 (MQ=255)

GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT  >  NC_000913/1140939‑1141037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`