| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 108 [0] | [0] 110 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 107 (0.940) | 66/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 108 total aligned reads displayed.
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 | aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:3535668/49‑1 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:1245464‑M1/1‑49 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:3862873‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:5193944‑M1/50‑3 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:4520022‑M1/1‑48 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 1:861532‑M1/49‑2 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 1:4267394‑M1/49‑2 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:8179349‑M1/50‑4 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:4022824‑M1/50‑4 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:6389338‑M1/50‑5 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:7737072‑M1/50‑5 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg > 1:3335521‑M1/1‑46 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:1002009‑M1/1‑44 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTTttcgctt > 1:663970‑M1/1‑43 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:4420616‑M1/1‑43 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:2267446‑M1/1‑42 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:3583186‑M1/1‑42 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt > 1:5317428‑M1/1‑41 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:266207‑M1/49‑9 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:1790350‑M1/49‑9 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:7070453‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:6128897‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTACAGTGttcgctttaaa < 1:3850228‑M1/50‑12 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaac < 1:4397845‑M1/50‑14 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:362597‑M1/1‑37 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:7769436‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:4980910‑M1/1‑35 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:2397837‑M1/1‑35 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:293000‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:3501221‑M1/1‑33 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:259809‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:3241224‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:5562818‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:405089‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:4921473‑M1/1‑31 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:8315177‑M1/50‑20 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:5315819‑M1/50‑21 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:6106726‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:7049221‑M1/1‑29 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:1566996‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:1149836‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:6849426‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTTttctctttaaaacatatcatgaaa > 1:827073‑M1/1‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac > 1:2079622‑M1/1‑25 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac < 1:6646821‑M1/50‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:7711363‑M1/49‑25 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:2845360‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:5396152‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:6268625‑M1/49‑27 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:6390891‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:2675025‑M1/50‑29 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:6491460‑M1/50‑29 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:4685977‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:2957321‑M1/1‑21 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:1047851‑M1/1‑20 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:2014599‑M1/1‑20 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 1:3960172‑M1/50‑32 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 1:1468565‑M1/50‑32 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 1:8432771‑M1/50‑32 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 1:5567655‑M1/50‑32 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:266952‑M1/50‑34 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:7026512‑M1/50‑34 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:6523399‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:8294478‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:6555673‑M1/49‑33 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:3259082‑M1/49‑33 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:7163415‑M1/50‑35 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:1446490‑M1/50‑35 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt < 1:4914619‑M1/50‑36 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt > 1:4534621‑M1/1‑15 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactggttatgttt < 1:7382263‑M1/49‑37 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:6190411‑M1/1‑13 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt < 1:2572595‑M1/49‑37 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg > 1:8305754‑M1/1‑12 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg > 1:474589‑M1/1‑12 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:5377526‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:4431216‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:6046926‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:5748349‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt < 1:1222591‑M1/50‑40 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:1426441‑M1/1‑11 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:6856580‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:6833253‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:3341668‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:8496840‑M1/1‑9 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:8078115‑M1/50‑43 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:3228620‑M1/50‑43 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:1333379‑M1/50‑43 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:7075922‑M1/50‑43 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:3255614‑M1/1‑7 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:6319262‑M1/1‑6 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:6164129‑M1/1‑5 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc < 1:2660826‑M1/49‑45 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc < 1:397846‑M1/49‑45 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:622008‑M1/48‑44 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:4136000‑M1/1‑4 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:4795924‑M1/1‑3 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct < 1:220240‑M1/50‑49 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:4677196‑M1/1‑2 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 1:7590872‑M1/1‑1 (MQ=255) | AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |