Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 76 [0] [0] 75 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)70 (0.650) 42/92 0.3 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902
                                                                                                     
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC                                                     <  1:4293803/50‑1
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC                                                     <  1:150968/50‑1
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC                                                     <  1:6244868/50‑1
  GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:3937421/50‑1
   GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT                                                  <  1:5561754/50‑1
    GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 <  1:5481404/50‑1
    GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 <  1:6016324/50‑1
     TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 >  1:5148/1‑49
     TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 >  1:686720/1‑49
      GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                                >  1:2636353/1‑49
       ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              >  1:818500/1‑50
       ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              <  1:6781366/50‑1
       ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              <  1:6582684/50‑1
       ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA                                               <  1:5967405/49‑1
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAATCATTATAAT                                             <  1:2768801/50‑1
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                             >  1:1513747/1‑50
        CCTGTTTCTTTCTGCTCACGCGCGACGATATAGAATTCAAACATTATAAT                                             <  1:3711612/50‑1
         CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                            >  1:4741520/1‑50
                TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      >  1:2935572/1‑49
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                    <  1:6408747/49‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                    <  1:5233238/49‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                    <  1:8569960/49‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                     <  1:6503710/48‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                     <  1:5650166/48‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:4433996/47‑1
                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                <  1:321722/49‑1
                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                >  1:7356510/1‑49
                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                <  1:7506428/49‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            >  1:1064830/1‑50
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            <  1:7357727/50‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            <  1:7407975/50‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                             <  1:283664/49‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                             <  1:5873149/49‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                              <  1:3278790/48‑1
                          CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC                           <  1:1350180/50‑1
                          CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC                           <  1:7267947/50‑1
                          CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC                           <  1:6767425/50‑1
                            CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                         <  1:1384985/50‑1
                             GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC                        <  1:3569223/50‑1
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                       >  1:8193193/1‑49
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                       >  1:6921601/1‑49
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                       >  1:2087210/1‑49
                                GCGATATAGAATTCAAACATTATAATCCGTTGTGATGTAAAAATTGCAA                      >  1:3724993/1‑49
                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   <  1:8544889/50‑1
                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:1026850/1‑49
                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:1745672/1‑49
                                   ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                  <  1:1189224/50‑1
                                     ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:8060231/1‑49
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:4405772/50‑1
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:3308485/50‑1
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:5869876/50‑1
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:5756322/1‑48
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:2735778/1‑48
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:1624621/1‑48
                                       AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG              >  1:5054959/1‑50
                                       AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG              >  1:7249883/1‑50
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT             <  1:8150292/50‑1
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT             <  1:5240761/50‑1
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG              <  1:4552654/49‑1
                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            >  1:7257871/1‑50
                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            >  1:3656134/1‑50
                                          ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC           <  1:142398/50‑1
                                           TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT          <  1:7241028/50‑1
                                            TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         >  1:3953458/1‑50
                                            TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         >  1:4600460/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:7510676/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:5887007/49‑1
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:3009601/49‑1
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:3564207/49‑1
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:1317938/49‑1
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:1718433/49‑1
                                              AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGACCTAC        <  1:7496217/49‑1
                                                ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       >  1:5726632/1‑48
                                                ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       >  1:7353421/1‑48
                                                 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:6481553/50‑1
                                                 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:6804348/50‑1
                                                  ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG   <  1:8184647/50‑1
                                                  ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    >  1:77317/1‑49
                                                   TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:3684898/50‑1
                                                                                                     
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.