| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 76 [0] | [0] 75 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 70 (0.650) | 42/92 | 0.3 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469805‑3469902 | ggtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatt < 1:5561754‑M2/1‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 1:6016324‑M2/2‑1 (MQ=255) gtgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta < 1:5481404‑M2/2‑1 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:686720‑M2/48‑49 (MQ=255) tgacctgtttctttctgctcacgcgcggcgatatagaattcaaacatta > 1:5148‑M2/48‑49 (MQ=255) gacctgtttctttctgctcacgcgcggcgatatagaattcaaacattat > 1:2636353‑M2/47‑49 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:5967405‑M2/4‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa > 1:818500‑M2/46‑50 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:6781366‑M2/5‑1 (MQ=255) acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:6582684‑M2/5‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaatcatTATAAt < 1:2768801‑M2/6‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt > 1:1513747‑M2/45‑50 (MQ=255) cctgtttctttctgctcacgcgcgacgatatagaattcaaacatTATAAt < 1:3711612‑M2/6‑1 (MQ=255) ctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATc > 1:4741520‑M2/44‑50 (MQ=255) tttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:2935572‑M2/37‑49 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:5650166‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:6503710‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt < 1:4433996‑M2/13‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:6408747‑M2/15‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:5233238‑M2/15‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:8569960‑M2/15‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa < 1:321722‑M2/19‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa > 1:7356510‑M2/31‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa < 1:7506428‑M2/19‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa > 1:1064830‑M2/28‑50 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa < 1:7357727‑M2/23‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa < 1:7407975‑M2/23‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:5873149‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:283664‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3278790‑M2/21‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:7267947‑M2/24‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:6767425‑M2/24‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:1350180‑M2/24‑1 (MQ=255) cgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg < 1:1384985‑M2/26‑1 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc < 1:3569223‑M2/27‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:8193193‑M2/22‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:6921601‑M2/22‑49 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:2087210‑M2/22‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCGTTGTGATGTAAAAATTGcaa > 1:3724993‑M2/21‑49 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac < 1:8544889‑M2/32‑1 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:1026850‑M2/19‑49 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:1745672‑M2/19‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca < 1:1189224‑M2/33‑1 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:8060231‑M2/16‑49 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaaa < 1:5869876‑M2/36‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaaa < 1:3308485‑M2/36‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaaa < 1:4405772‑M2/36‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:1624621‑M2/15‑48 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:2735778‑M2/15‑48 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:5756322‑M2/15‑48 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg > 1:5054959‑M2/14‑50 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg > 1:7249883‑M2/14‑50 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg < 1:4552654‑M2/37‑1 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:8150292‑M2/38‑1 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:5240761‑M2/38‑1 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 1:7257871‑M2/12‑50 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 1:3656134‑M2/12‑50 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc < 1:142398‑M2/40‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:7241028‑M2/41‑1 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa > 1:4600460‑M2/9‑50 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa > 1:3953458‑M2/9‑50 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:3009601‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:3564207‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:5887007‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:1718433‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:1317938‑M2/42‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc > 1:7510676‑M2/8‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGACCTAc < 1:7496217‑M2/43‑1 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:7353421‑M2/5‑48 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:5726632‑M2/5‑48 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg < 1:6481553‑M2/47‑1 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg < 1:6804348‑M2/47‑1 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg < 1:8184647‑M2/48‑1 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 1:77317‑M2/3‑49 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 1:3684898‑M2/49‑1 (MQ=255) | ACACCAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469805‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |