| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 76 [0] | [0] 75 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 70 (0.650) | 42/92 | 0.3 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:3937421‑M1/50‑1 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATt < 1:5561754‑M1/50‑2 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:5481404‑M1/50‑3 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:6016324‑M1/50‑3 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:686720‑M1/1‑47 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:5148‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:2636353‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:818500‑M1/1‑45 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:6582684‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:6781366‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:5967405‑M1/49‑5 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAATCATtataat < 1:2768801‑M1/50‑7 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat > 1:1513747‑M1/1‑44 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGACGATATAGAATTCAAACATtataat < 1:3711612‑M1/50‑7 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatc > 1:4741520‑M1/1‑43 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2935572‑M1/1‑36 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:6408747‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:5233238‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:8569960‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:6503710‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:5650166‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:4433996‑M1/47‑14 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta > 1:7356510‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta < 1:321722‑M1/49‑20 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta < 1:7506428‑M1/49‑20 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:7357727‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:1064830‑M1/1‑27 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:7407975‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:5873149‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:283664‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:3278790‑M1/48‑22 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:7267947‑M1/50‑25 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:6767425‑M1/50‑25 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:1350180‑M1/50‑25 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg < 1:1384985‑M1/50‑27 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc < 1:3569223‑M1/50‑28 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:8193193‑M1/1‑21 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:2087210‑M1/1‑21 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:6921601‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatccgttgtgatgtaaaaattgcaa > 1:3724993‑M1/1‑20 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:8544889‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1745672‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1026850‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:1189224‑M1/50‑34 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:8060231‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:3308485‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:5869876‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:4405772‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:1624621‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:5756322‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2735778‑M1/1‑14 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:5054959‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:7249883‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:8150292‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:5240761‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag < 1:4552654‑M1/49‑38 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:3656134‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:7257871‑M1/1‑11 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:142398‑M1/50‑41 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:7241028‑M1/50‑42 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:3953458‑M1/1‑8 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:4600460‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:7510676‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:3009601‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:3564207‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:1718433‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:1317938‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:5887007‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagacctac < 1:7496217‑M1/49‑44 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:7353421‑M1/1‑4 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:5726632‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:6804348‑M1/50‑48 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:6481553‑M1/50‑48 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:8184647‑M1/50‑49 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:77317‑M1/1‑2 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:3684898‑M1/50‑50 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |