| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 141 [0] | [0] 143 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 138 (1.240) | 74/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 141 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:8127655/50‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:8183217/49‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:6103305/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:6708461/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:5097746/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:645077/1‑49 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:2632846/1‑50 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:6474231/50‑1 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:2921964/1‑49 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:2333007/1‑49 TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:6323154/1‑49 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:2918392/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:5274097/1‑48 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:2375925/1‑48 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGAAATACGAGAAATCAC < 1:807253/49‑1 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:5828302/1‑50 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:531056/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:7883309/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:2618205/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:6661855/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:2694994/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:4816485/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:5932046/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:4876096/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:4349321/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:4726310/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:2971310/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:1319987/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:3012088/1‑50 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:6358127/50‑1 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 1:6892751/1‑50 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAAGACAT > 1:1600957/1‑50 CGATAATGCTTGTACCAACAGGGATGGAATACGAGAAATCACAGGACATT > 1:498166/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:3311242/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:6973712/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:6233801/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:3374082/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:6024944/49‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:7771841/49‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:7831314/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:7226718/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:678775/1‑50 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:4575285/1‑49 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:654648/1‑49 AATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:7930212/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:2912224/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:5934935/49‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:8591692/49‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:3443860/49‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:8316371/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:6774013/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:225089/50‑1 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:4185045/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC < 1:7647384/50‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:8066736/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:1983088/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:7392513/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:5719930/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:5672565/48‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:3829840/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:6538960/1‑49 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:170161/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:4170533/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:5104382/49‑1 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:6065824/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:8435546/1‑50 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:89151/1‑50 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:8589901/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:4626117/1‑50 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC < 1:1137287/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:5138506/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:4633785/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:1038905/1‑50 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:1049788/1‑50 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:8439660/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:7750284/1‑50 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:6689056/1‑49 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:2094474/1‑49 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:3810958/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:2455365/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT < 1:1779235/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:4662304/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:4531464/1‑49 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:5752833/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:860251/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:7126710/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:2854673/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:5098566/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:1414210/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:5452395/1‑50 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:8088803/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 1:1284994/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 1:5866943/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:101988/1‑49 ACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG > 1:7205801/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC < 1:5058935/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:1779044/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:5567776/1‑49 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:558264/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 1:1216953/1‑49 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |