| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 141 [0] | [0] 143 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 138 (1.240) | 74/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 141 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496627‑4496723 | aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg < 1:8127655‑M1/50‑2 (MQ=255)aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:8183217‑M1/49‑1 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:6103305‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:6708461‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:5097746‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg > 1:645077‑M1/1‑48 (MQ=255) gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:2632846‑M1/1‑46 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:6474231‑M1/50‑6 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:2921964‑M1/1‑44 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:2333007‑M1/1‑44 (MQ=255) ttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:6323154‑M1/1‑42 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcac < 1:2918392‑M1/49‑9 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:5274097‑M1/1‑41 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:2375925‑M1/1‑41 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGAAATACGAgaaatcac < 1:807253‑M1/49‑9 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:5828302‑M1/1‑40 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcaca < 1:531056‑M1/49‑10 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:7883309‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:2618205‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:6661855‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:2694994‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:4816485‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:5932046‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:4876096‑M1/49‑11 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:4349321‑M1/1‑38 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:4726310‑M1/1‑38 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:2971310‑M1/50‑13 (MQ=255) gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggac < 1:1319987‑M1/50‑14 (MQ=255) ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca > 1:3012088‑M1/1‑36 (MQ=255) ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca < 1:6358127‑M1/50‑15 (MQ=255) tCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat > 1:6892751‑M1/1‑35 (MQ=255) tCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaagacat > 1:1600957‑M1/1‑35 (MQ=255) cGATAATGCTTGTACCAACAGGGATGGAATACGAgaaatcacaggacatt > 1:498166‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:3311242‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:6973712‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:6233801‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:3374082‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat < 1:6024944‑M1/49‑16 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat < 1:7771841‑M1/49‑16 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat < 1:7831314‑M1/49‑16 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:7226718‑M1/49‑17 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:678775‑M1/1‑32 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:4575285‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:654648‑M1/1‑31 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct > 1:7930212‑M1/1‑30 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa < 1:2912224‑M1/50‑22 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:5934935‑M1/49‑21 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:8591692‑M1/49‑21 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:3443860‑M1/49‑21 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat < 1:8316371‑M1/50‑23 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat < 1:6774013‑M1/50‑23 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat < 1:225089‑M1/50‑23 (MQ=255) gCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg > 1:4185045‑M1/1‑27 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc < 1:7647384‑M1/50‑25 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc > 1:8066736‑M1/1‑26 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc > 1:1983088‑M1/1‑26 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:7392513‑M1/1‑23 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg < 1:5719930‑M1/49‑27 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct < 1:5672565‑M1/48‑26 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct < 1:3829840‑M1/48‑26 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:6538960‑M1/1‑22 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg < 1:170161‑M1/49‑28 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg < 1:4170533‑M1/49‑28 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg < 1:5104382‑M1/49‑28 (MQ=255) aCCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta > 1:6065824‑M1/1‑21 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac > 1:8435546‑M1/1‑20 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:89151‑M1/1‑19 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg < 1:8589901‑M1/50‑32 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:4626117‑M1/1‑19 (MQ=255) aaCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgc < 1:1137287‑M1/50‑33 (MQ=255) aaCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:5138506‑M1/1‑18 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca < 1:4633785‑M1/50‑34 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:1038905‑M1/1‑16 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:1049788‑M1/1‑16 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa < 1:8439660‑M1/50‑35 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:7750284‑M1/1‑16 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:6689056‑M1/1‑15 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:2094474‑M1/1‑15 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata < 1:3810958‑M1/50‑37 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata < 1:2455365‑M1/50‑37 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat < 1:1779235‑M1/50‑38 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt < 1:4662304‑M1/50‑39 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:4531464‑M1/1‑12 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:5752833‑M1/50‑40 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:860251‑M1/50‑40 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:7126710‑M1/50‑40 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:2854673‑M1/50‑41 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:5098566‑M1/50‑41 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct < 1:1414210‑M1/50‑43 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:5452395‑M1/1‑8 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:8088803‑M1/50‑44 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctga < 1:1284994‑M1/50‑45 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctga < 1:5866943‑M1/50‑45 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:101988‑M1/1‑6 (MQ=255) aCGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaag > 1:7205801‑M1/1‑4 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc < 1:5058935‑M1/50‑48 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct < 1:1779044‑M1/50‑49 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:5567776‑M1/1‑2 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:558264‑M1/1‑2 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaatattacctgaagct > 1:1216953‑M1/1‑1 (MQ=255) | ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496627‑4496723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |