| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 141 [0] | [0] 143 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 138 (1.240) | 74/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 143 total aligned reads displayed.
GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 | atggtatttccggttcgataatgcttgtaccaacagggagggaatacgag < 1:8127655‑M2/1‑1 (MQ=255) tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:5097746‑M2/2‑1 (MQ=255) tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:645077‑M2/49‑49 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:6538583‑M2/48‑49 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:8053842‑M2/48‑49 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:3886295‑M2/45‑49 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:2333007‑M2/45‑49 (MQ=255) ttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:6323154‑M2/43‑49 (MQ=255) ttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:4996479‑M2/43‑49 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcac < 1:2918392‑M2/8‑1 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:5274097‑M2/42‑48 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:2375925‑M2/42‑48 (MQ=255) tccggttcgataatgcttgtaccaacagggaggaaatacgaGAAATcac < 1:807253‑M2/8‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:531056‑M2/9‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:5828302‑M2/41‑50 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:4816485‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:7883309‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:5932046‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:2618205‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:6661855‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:2694994‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:4876096‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:2949169‑M2/10‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:4726310‑M2/39‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:4349321‑M2/39‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:2971310‑M2/12‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:1319987‑M2/13‑1 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa > 1:6771623‑M2/37‑50 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:6358127‑M2/14‑1 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:6892751‑M2/36‑50 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAAGACAt > 1:1600957‑M2/36‑50 (MQ=255) cgataatgcttgtaccaacagggatggaatacgaGAAATCACAGGACAtt > 1:498166‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:3374082‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:6233801‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:6024944‑M2/15‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:7831314‑M2/15‑1 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:4620696‑M2/33‑50 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:4575285‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:580620‑M2/19‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:2506082‑M2/19‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa < 1:2912224‑M2/21‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa < 1:6548328‑M2/21‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:5934935‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:8591692‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:3443860‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:7739216‑M2/29‑50 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:6774013‑M2/22‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:4185045‑M2/28‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:3829840‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:5672565‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:2258620‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3129292‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:7392513‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:5719930‑M2/26‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:5104382‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:6538960‑M2/23‑49 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3688800‑M2/23‑49 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:170161‑M2/27‑1 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:6065824‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:7202123‑M2/21‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:8435546‑M2/21‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:89151‑M2/20‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg < 1:8589901‑M2/31‑1 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:5138506‑M2/19‑49 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGc < 1:2902476‑M2/32‑1 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGc < 1:1137287‑M2/32‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:2644215‑M2/33‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:4633785‑M2/33‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:1550450‑M2/17‑50 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:7750284‑M2/17‑50 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:8439660‑M2/34‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:1049788‑M2/17‑50 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:1038905‑M2/17‑50 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:6689056‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:2094474‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:7863499‑M2/16‑49 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:7242417‑M2/37‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:2059814‑M2/14‑50 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:1779235‑M2/37‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:4531464‑M2/13‑49 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:4662304‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:7126710‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:860251‑M2/39‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc < 1:5098566‑M2/40‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:5452395‑M2/9‑50 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:8088803‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:101988‑M2/7‑49 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:1284994‑M2/44‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:5866943‑M2/44‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:6840633‑M2/6‑48 (MQ=255) acgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg > 1:7205801‑M2/5‑50 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc < 1:8190736‑M2/47‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:5567776‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:558264‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:6160179‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:1779044‑M2/48‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt > 1:1216953‑M2/2‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:7965734/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:3068724/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:814326/1‑49 (MQ=255) | GCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549663‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |