| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 112 [0] | [0] 116 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 105 (0.960) | 62/94 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 112 total aligned reads displayed.
AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729316‑729413 | aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:4567433‑M1/50‑2 (MQ=255)aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:3367811‑M1/50‑2 (MQ=255)aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc > 1:7684524‑M1/1‑49 (MQ=255)aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:1829904‑M1/50‑2 (MQ=255) aaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcg < 1:2258159‑M1/50‑3 (MQ=255) aGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgt < 1:5630248‑M1/50‑4 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc < 1:4216607‑M1/50‑5 (MQ=255) ggCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:2833214‑M1/1‑46 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:3213944‑M1/50‑6 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:7520953‑M1/1‑44 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:4378171‑M1/1‑44 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:3797854‑M1/1‑44 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctac < 1:5192749‑M1/50‑8 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:5146988‑M1/1‑43 (MQ=255) aCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctaca < 1:5967021‑M1/50‑9 (MQ=255) tGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:4605652‑M1/1‑40 (MQ=255) ggTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact > 1:5334064‑M1/1‑39 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta > 1:1532717‑M1/1‑38 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta > 1:7588991‑M1/1‑38 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta < 1:3046834‑M1/50‑13 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 1:2053812‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 1:6368235‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:5242108‑M1/48‑11 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:2420969‑M1/48‑11 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 1:7074499‑M1/1‑37 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 1:5524743‑M1/1‑37 (MQ=255) gATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact > 1:5010426‑M1/1‑36 (MQ=255) gATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact > 1:5983101‑M1/1‑36 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc > 1:7420420‑M1/1‑35 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc < 1:613527‑M1/50‑16 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc < 1:7670625‑M1/50‑16 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact < 1:7061970‑M1/49‑15 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc > 1:2665654‑M1/1‑34 (MQ=255) ttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct > 1:6762773‑M1/1‑33 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct < 1:5916287‑M1/49‑18 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg < 1:5271705‑M1/49‑19 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:5951861‑M1/1‑31 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctgt > 1:2829104‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctgt < 1:1918229‑M1/49‑20 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa < 1:2115472‑M1/50‑23 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa < 1:4507732‑M1/50‑23 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaa < 1:7133423‑M1/49‑22 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaa < 1:1542087‑M1/49‑22 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaa < 1:2009306‑M1/49‑22 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 1:2658843‑M1/1‑27 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaac > 1:6355698‑M1/1‑27 (MQ=255) gcttgctGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc > 1:8109150‑M1/3‑26 (MQ=255) gattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc > 1:4169269‑M1/1‑26 (MQ=255) gattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc > 1:5916503‑M1/1‑26 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:7358932‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:833410‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:1230527‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:3838122‑M1/49‑25 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgc < 1:8241654‑M1/50‑27 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 1:7022039‑M1/49‑28 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:1932627‑M1/1‑22 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:279393‑M1/1‑22 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 1:2374285‑M1/49‑28 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctc < 1:8498885‑M1/49‑29 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctc < 1:4973044‑M1/49‑29 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctc < 1:3949626‑M1/49‑29 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctc < 1:4046620‑M1/49‑29 (MQ=255) gAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:2598842‑M1/1‑19 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:6577552‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagg < 1:7926669‑M1/49‑32 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag < 1:8311348‑M1/50‑34 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagc < 1:5527817‑M1/50‑35 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:2820978‑M1/1‑16 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:861465‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:1138252‑M1/1‑15 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:8095912‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:6839683‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:4417563‑M1/1‑14 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt < 1:289923‑M1/49‑38 (MQ=255) aaTACATTGAAcgtctacacttgctcctgtaaaccgctcaggagcagta < 1:6121247‑M1/49‑39 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:1737573‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa > 1:8497137‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:3996050‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa > 1:78549‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:2937692‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa > 1:7836578‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:1788897‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:5174954‑M1/49‑39 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg < 1:151770‑M1/50‑42 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:1022055‑M1/1‑9 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg > 1:1183351‑M1/1‑8 (MQ=255) aTTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgact > 1:6555667‑M1/1‑6 (MQ=255) aTTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaat > 1:3555277‑M1/1‑6 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 1:624986‑M1/50‑46 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc < 1:8373103‑M1/50‑46 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:636558‑M1/1‑3 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:7815987‑M1/1‑3 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:160483‑M1/1‑3 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatct < 1:2565361‑M1/49‑47 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:196006‑M1/1‑2 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta < 1:1333503‑M1/49‑48 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:8437499‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:6045081‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac > 1:4627931‑M1/1‑1 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctac > 1:6366202‑M1/1‑1 (MQ=255) | AAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729316‑729413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |