| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 114 [0] | [0] 113 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 112 (0.980) | 67/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
Only 100 of 114 total aligned reads displayed.
ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286351‑2286448 | aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTcc > 1:5255540/1‑50 (MQ=255)aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTcc > 1:3389223/1‑50 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:7514805‑M1/50‑2 (MQ=255) cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:3869239‑M1/1‑49 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:4997990‑M1/1‑47 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 1:6230183‑M1/1‑46 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag > 1:4733845‑M1/1‑46 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:7446950‑M1/50‑5 (MQ=255) ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc > 1:6596019‑M1/1‑45 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:1990515‑M1/1‑43 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:3956948‑M1/1‑42 (MQ=255) tGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt < 1:6830252‑M1/50‑9 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:5036023‑M1/1‑41 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:6117205‑M1/49‑10 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat < 1:8082442‑M1/50‑12 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:8336944‑M1/1‑39 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat < 1:4098254‑M1/50‑12 (MQ=255) cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat > 1:2732636‑M1/1‑39 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc < 1:6305551‑M1/50‑13 (MQ=255) acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc > 1:1484668‑M1/1‑38 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:2830006‑M1/1‑37 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc < 1:1345543‑M1/50‑14 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc < 1:1865721‑M1/50‑14 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc < 1:5250864‑M1/50‑14 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:4091304‑M1/1‑37 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:5610718‑M1/1‑37 (MQ=255) aTCACAGCCTGTTTAGTTTCTGTTATCAGAACGTCCtgagctttcatcct < 1:8076890‑M1/50‑15 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta < 1:703202‑M1/50‑16 (MQ=255) tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta < 1:2111799‑M1/50‑16 (MQ=255) cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:3558117‑M1/1‑34 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg < 1:7249598‑M1/50‑18 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg < 1:1715743‑M1/50‑18 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatg < 1:3678323‑M1/50‑18 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:2893182‑M1/50‑19 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa < 1:288347‑M1/50‑20 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:7986378‑M1/1‑31 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:4994467‑M1/1‑31 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:5523346‑M1/50‑21 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:5464107‑M1/1‑29 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:4244453‑M1/50‑22 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:189866‑M1/1‑29 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:5766030‑M1/1‑28 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:5820147‑M1/1‑28 (MQ=255) cTGTTTATTTCCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt < 1:6835931‑M1/50‑23 (MQ=255) gTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa > 1:6136968‑M1/1‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaat < 1:424028‑M1/50‑26 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa < 1:7964593‑M1/49‑25 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:6574308‑M1/1‑24 (MQ=255) tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt < 1:5149764‑M1/49‑27 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc > 1:7234384‑M1/1‑22 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatggaattaattgc < 1:5316523‑M1/49‑29 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct < 1:6310870‑M1/50‑30 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:5872696‑M1/49‑31 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:6483701‑M1/49‑31 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:4179808‑M1/49‑31 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 1:877956‑M1/49‑32 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt > 1:3824081‑M1/1‑18 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt < 1:5814086‑M1/49‑33 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt < 1:3588994‑M1/49‑33 (MQ=255) cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt < 1:7731896‑M1/49‑33 (MQ=255) gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:3787353‑M1/1‑15 (MQ=255) gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa > 1:857531‑M1/1‑15 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:6241291‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:1571276‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaa < 1:4653153‑M1/49‑36 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:1506149‑M1/47‑34 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:2688832‑M1/47‑34 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:7989507‑M1/1‑13 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:6614810‑M1/1‑13 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:384867‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:1162053‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag < 1:16254‑M1/49‑38 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:2004086‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:3941808‑M1/1‑12 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag < 1:4765011‑M1/49‑38 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:2564851‑M1/1‑10 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:7031871‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:6210998‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:2455576‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:5413509‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat < 1:3499803‑M1/49‑41 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:6395038‑M1/1‑8 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:4817281‑M1/1‑8 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:1601106‑M1/1‑8 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg < 1:1246347‑M1/50‑44 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:7654629‑M1/1‑7 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:3612626‑M1/1‑6 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:2105697‑M1/1‑6 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 1:4033113‑M1/50‑46 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:5704340‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta < 1:4704038‑M1/50‑47 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta < 1:3971496‑M1/50‑47 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta < 1:8300698‑M1/50‑47 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:7070792‑M1/50‑48 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:59382‑M1/1‑3 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:5506630‑M1/1‑3 (MQ=255) cctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:619960‑M1/1‑2 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtaca < 1:6236522‑M1/49‑49 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggtaca < 1:3254564‑M1/49‑49 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:915777‑M1/1‑1 (MQ=255) | ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCAT > NC_000913/2286351‑2286448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |