| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 114 [0] | [0] 113 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 112 (0.980) | 67/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
Only 100 of 113 total aligned reads displayed.
GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 | cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:4693171‑M2/50‑50 (MQ=255)cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:3869239‑M2/50‑50 (MQ=255)cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct < 1:7514805‑M2/1‑1 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:4997990‑M2/48‑48 (MQ=255) accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg > 1:4733845‑M2/47‑50 (MQ=255) accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg < 1:7446950‑M2/4‑1 (MQ=255) accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg > 1:6230183‑M2/47‑50 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:3718732‑M2/45‑50 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:166319‑M2/45‑50 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt > 1:1990515‑M2/44‑50 (MQ=255) tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:3956948‑M2/43‑50 (MQ=255) tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt < 1:6830252‑M2/8‑1 (MQ=255) gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:5036023‑M2/42‑49 (MQ=255) gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:5099805‑M2/42‑49 (MQ=255) acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTc < 1:6117205‑M2/9‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt > 1:2732636‑M2/40‑50 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt < 1:8082442‑M2/11‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt > 1:8336944‑M2/40‑50 (MQ=255) acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc < 1:6305551‑M2/12‑1 (MQ=255) acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc > 1:1484668‑M2/39‑50 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:2830006‑M2/38‑50 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc < 1:1865721‑M2/13‑1 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:4091304‑M2/38‑50 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc < 1:5250864‑M2/13‑1 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:5610718‑M2/38‑50 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc < 1:1345543‑M2/13‑1 (MQ=255) atcacagcctgtttagtttctgttatcagaacgtccTGAGCTTTCATCCt < 1:8076890‑M2/14‑1 (MQ=255) tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa < 1:2111799‑M2/15‑1 (MQ=255) tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa < 1:703202‑M2/15‑1 (MQ=255) cacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:3558117‑M2/35‑50 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:6303724‑M2/34‑49 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg < 1:3678323‑M2/17‑1 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg < 1:1715743‑M2/17‑1 (MQ=255) cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa < 1:2893182‑M2/18‑1 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaa < 1:288347‑M2/19‑1 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa > 1:4994467‑M2/32‑49 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa > 1:7986378‑M2/32‑49 (MQ=255) gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa < 1:5523346‑M2/20‑1 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:189866‑M2/30‑50 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:5548741‑M2/30‑50 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:5464107‑M2/30‑50 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat < 1:4244453‑M2/21‑1 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:5766030‑M2/29‑49 (MQ=255) ctgtttatttcctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt < 1:6835931‑M2/22‑1 (MQ=255) gtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa > 1:6136968‑M2/27‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat < 1:424028‑M2/25‑1 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa < 1:7964593‑M2/24‑1 (MQ=255) ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt > 1:6574308‑M2/25‑50 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt < 1:5149764‑M2/26‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:7234384‑M2/23‑50 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGGAATTAATTGc < 1:5316523‑M2/28‑1 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc < 1:6037041‑M2/28‑1 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt < 1:6310870‑M2/29‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:5872696‑M2/30‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:4179808‑M2/30‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:6483701‑M2/30‑1 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt < 1:877956‑M2/31‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:3588994‑M2/32‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:7731896‑M2/32‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:5814086‑M2/32‑1 (MQ=255) tgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa > 1:3040827‑M2/17‑49 (MQ=255) gttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:3787353‑M2/16‑49 (MQ=255) gttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:857531‑M2/16‑49 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:1571276‑M2/36‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:6241291‑M2/36‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:4653153‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa < 1:1506149‑M2/33‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa < 1:2688832‑M2/33‑1 (MQ=255) tatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:6614810‑M2/14‑50 (MQ=255) tatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:7989507‑M2/14‑50 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:1162053‑M2/13‑49 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:2004086‑M2/13‑49 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:384867‑M2/13‑49 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:3941808‑M2/13‑49 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg < 1:4765011‑M2/37‑1 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:2564851‑M2/11‑50 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:7031871‑M2/11‑50 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt < 1:2455576‑M2/41‑1 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt < 1:6210998‑M2/41‑1 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt < 1:3499803‑M2/40‑1 (MQ=255) gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg > 1:6395038‑M2/9‑50 (MQ=255) gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg > 1:1601106‑M2/9‑50 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 1:1246347‑M2/43‑1 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg > 1:7250100‑M2/8‑50 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg > 1:7654629‑M2/8‑50 (MQ=255) acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg > 1:3612626‑M2/7‑50 (MQ=255) acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg > 1:2105697‑M2/7‑50 (MQ=255) cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt < 1:4033113‑M2/45‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:5704340‑M2/5‑50 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:4704038‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:3996151‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:3971496‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:8300698‑M2/46‑1 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:59382‑M2/4‑49 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:5506630‑M2/4‑49 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc < 1:7070792‑M2/47‑1 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc < 1:6664034‑M2/47‑1 (MQ=255) ccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:619960‑M2/3‑48 (MQ=255) cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:915777‑M2/2‑47 (MQ=255) tGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg > 1:136778/1‑49 (MQ=255) | GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |