| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 114 [0] | [0] 113 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 110 (0.960) | 64/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 114 total aligned reads displayed.
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466495‑2466592 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:3701540/1‑50 (MQ=255)aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:6043117/1‑50 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:7639881‑M1/50‑2 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:5340887‑M1/50‑2 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:3439648/1‑48 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:3442191/1‑47 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtag < 1:5722145‑M1/50‑4 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtag < 1:412743‑M1/50‑4 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:8324395‑M1/49‑3 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:5629827‑M1/50‑6 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:7270232‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:5828475‑M1/50‑7 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:3815914‑M1/50‑8 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:3695974‑M1/1‑43 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:7002274‑M1/1‑43 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:218132‑M1/1‑42 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:2954705‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:4098876‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:5155657‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:8514804‑M1/49‑10 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 1:2311918‑M1/50‑13 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:6097362‑M1/1‑38 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:7300294‑M1/1‑38 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:7831513‑M1/1‑38 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:5896666‑M1/1‑37 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag < 1:3301793‑M1/50‑14 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:6400661‑M1/1‑37 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:731929‑M1/1‑37 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 1:6752092‑M1/50‑16 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:8492095‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:2441403‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:4423091‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:6297914‑M1/1‑33 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct < 1:6025597‑M1/49‑17 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagtctca > 1:6579057‑M1/1‑32 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:4695549‑M1/1‑32 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcac < 1:2154249‑M1/50‑20 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:2096678‑M1/1‑31 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:5520852‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:4061717‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:3755243‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:612893‑M1/50‑22 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:4107136‑M1/1‑27 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:1383242‑M1/1‑26 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:2370392‑M1/1‑26 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:1238047‑M1/1‑26 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:500104‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:7794930‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCttgagccatacagcctcacactcgat < 1:1674549‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:1698584‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 1:3702544‑M1/49‑26 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:8379760‑M1/1‑23 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:8411573‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:533462‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:1528719‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:5546101‑M1/1‑21 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:8169491‑M1/1‑20 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:3895445‑M1/1‑20 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:3047886‑M1/49‑30 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:2565831‑M1/49‑30 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:7966655‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:6954691‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:2849719‑M1/1‑19 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:5874072‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3981253‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 1:5725035‑M1/49‑32 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 1:3516603‑M1/49‑32 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:8491475‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:1626067‑M1/1‑17 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:5084231‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:3238405‑M1/50‑35 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtc < 1:2197775‑M1/50‑37 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:4694023‑M1/50‑38 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:3384502‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:5360718‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 1:4571140‑M1/1‑11 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 1:4854575‑M1/1‑11 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:6725217‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacacccgatgaggcctgtcagtt < 1:7019520‑M1/50‑41 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt > 1:160156‑M1/1‑9 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:3351978‑M1/50‑42 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:748367‑M1/50‑42 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:1857077‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:7708026‑M1/1‑7 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:4646626‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct < 1:1465261‑M1/49‑44 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:3572320‑M1/49‑45 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:5433383‑M1/49‑45 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:7723739‑M1/1‑4 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:2543004‑M1/1‑4 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:8055482‑M1/1‑4 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:8129575‑M1/1‑4 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa < 1:5942371‑M1/49‑47 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa > 1:5400461‑M1/1‑3 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa < 1:4539105‑M1/49‑47 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtaagtttcttaa < 1:5321544‑M1/49‑47 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:7722516‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:7477761‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 1:6853368‑M1/50‑49 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:6059072‑M1/1‑2 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466495‑2466592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |