| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 114 [0] | [0] 113 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 110 (0.960) | 64/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 113 total aligned reads displayed.
ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 | tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:7639881‑M2/1‑1 (MQ=255)tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:5340887‑M2/1‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTag < 1:5722145‑M2/3‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:8324395‑M2/2‑1 (MQ=255) acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:4024110‑M2/2‑1 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag < 1:5629827‑M2/5‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:5828475‑M2/6‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:7270232‑M2/6‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGcc < 1:3815914‑M2/7‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:7002274‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:3695974‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:218132‑M2/43‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:8514804‑M2/9‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:5155657‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:4098876‑M2/10‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4581761‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:2954705‑M2/41‑50 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:7719302‑M2/40‑49 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:5315865‑M2/40‑49 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:7831513‑M2/39‑48 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:6097362‑M2/39‑48 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:7300294‑M2/39‑48 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATACa < 1:2311918‑M2/12‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:3301793‑M2/13‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:5896666‑M2/38‑50 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:731929‑M2/38‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:725838‑M2/36‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc < 1:6752092‑M2/15‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 1:6025597‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:6297914‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:8492095‑M2/17‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:4423091‑M2/17‑1 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGTCTca > 1:6579057‑M2/33‑50 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:4695549‑M2/33‑50 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:2154249‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:2096678‑M2/32‑49 (MQ=255) aaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca > 1:5520852‑M2/31‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:4061717‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:612893‑M2/21‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4107136‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:1383242‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:2370392‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:1238047‑M2/27‑49 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:7794930‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTTGAGCCATACAGCCTCACACTCGAt < 1:1674549‑M2/26‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa < 1:3702544‑M2/25‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:1698584‑M2/25‑50 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:8379760‑M2/24‑49 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:8411573‑M2/23‑48 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:1528719‑M2/22‑50 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:5546101‑M2/22‑50 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:533462‑M2/22‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:8169491‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:3895445‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:2565831‑M2/29‑1 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 1:3047886‑M2/29‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:6954691‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:7966655‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:2849719‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:3981253‑M2/19‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc < 1:5725035‑M2/31‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc < 1:3516603‑M2/31‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:8491475‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:1626067‑M2/18‑50 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:3238405‑M2/34‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:5084231‑M2/34‑1 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:3280014‑M2/15‑49 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTc < 1:2197775‑M2/36‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 1:2435881‑M2/37‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 1:4694023‑M2/37‑1 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCa < 1:3683309‑M2/37‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:3384502‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:5360718‑M2/13‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 1:4571140‑M2/12‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 1:4854575‑M2/12‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 1:6725217‑M2/11‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 1:5994733‑M2/41‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 1:748367‑M2/41‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:160156‑M2/10‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:1857077‑M2/9‑50 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:5587855‑M2/7‑49 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt < 1:1465261‑M2/43‑1 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:4646626‑M2/7‑49 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:3572320‑M2/44‑1 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:5433383‑M2/44‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:2543004‑M2/5‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:8129575‑M2/5‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:8055482‑M2/5‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 1:7723739‑M2/5‑49 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:4539105‑M2/46‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:5942371‑M2/46‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTAAGTTTCTTaa < 1:5321544‑M2/46‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:7722516‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:7477761‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:6853368‑M2/48‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:6471319‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:6059072‑M2/3‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:758319/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:3505114/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:3922466/1‑50 (MQ=255) | ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |