BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	167,484	Δ5,964 bp		[fhuA]–fhuB	[fhuA], fhuC, fhuD, fhuB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	167484	173447	5964	139 [0]	[0] 138	[fhuA]–fhuB	[fhuA],fhuC,fhuD,fhuB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 167483	0 (0.000)	138 (1.210)	72/98	0.0	100%	intergenic (+219/‑1)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
*	?	NC_000913	173448 =	0 (0.000)	138 (1.210)	72/98	0.0	100%	intergenic (+4/+154)	fhuB/hemL	iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase

Only 100 of 139 total aligned reads displayed.

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG  >  NC_000913/167434‑167532

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                  >  1:6529848‑M1/1‑49 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                  <  1:1737071‑M1/50‑2 (MQ=255)

  aaTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                 >  1:7666287‑M1/1‑48 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                >  1:7618261‑M1/1‑47 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                >  1:7801503‑M1/1‑47 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                <  1:2423370‑M1/50‑4 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                 <  1:5271302‑M1/49‑3 (MQ=255)

    tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                >  1:8026790‑M1/1‑46 (MQ=255)

    tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                >  1:1963002‑M1/1‑46 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                              >  1:4102565‑M1/1‑45 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                              >  1:8168987‑M1/1‑45 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat                                             <  1:3476038‑M1/50‑7 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                              >  1:1652342‑M1/1‑44 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                            <  1:7330213‑M1/50‑8 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                            >  1:5792616‑M1/1‑43 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                            >  1:1050171‑M1/1‑43 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                            >  1:8466081‑M1/1‑43 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                           >  1:6973120‑M1/1‑41 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                           >  1:6895253‑M1/1‑41 (MQ=255)

           cGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                        >  1:38084‑M1/1‑39 (MQ=255)

           cGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                        >  1:8589448‑M1/1‑39 (MQ=255)

           agtTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                        >  1:4686534‑M1/2‑39 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                          <  1:8249886‑M1/47‑10 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                          <  1:8512606‑M1/47‑10 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                          <  1:1964642‑M1/47‑10 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                      <  1:5729104‑M1/50‑14 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                      <  1:3732749‑M1/50‑14 (MQ=255)

              ttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc                                     >  1:2065660‑M1/1‑36 (MQ=255)

               tACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                    >  1:2351652‑M1/1‑35 (MQ=255)

               tACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc                                     <  1:8323499‑M1/49‑15 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                   >  1:2000621‑M1/1‑34 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                   >  1:315271‑M1/1‑34 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                   >  1:3014956‑M1/1‑34 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                    <  1:5648527‑M1/49‑16 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct                                  >  1:4920413‑M1/1‑33 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct                                  >  1:7413044‑M1/1‑33 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct                                  >  1:4940797‑M1/1‑33 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct                                  >  1:337453‑M1/1‑33 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:766172‑M1/1‑32 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:7865074‑M1/1‑32 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:733545‑M1/1‑32 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:6201621‑M1/1‑32 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:4713195‑M1/1‑31 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:7548081‑M1/1‑31 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:8018351‑M1/1‑31 (MQ=255)

                    tATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               >  1:6425654‑M1/1‑30 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              >  1:2631316‑M1/1‑29 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              >  1:4354376‑M1/1‑29 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              >  1:377979‑M1/1‑29 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               <  1:5502428‑M1/49‑21 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               <  1:5712221‑M1/49‑21 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacg                             >  1:4293183‑M1/1‑28 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacg                             >  1:3473332‑M1/1‑28 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacg                             <  1:126061‑M1/50‑23 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              <  1:1677493‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              <  1:7203675‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgaacg                             >  1:3168657‑M1/1‑28 (MQ=255)

                       cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            >  1:4764579‑M1/1‑27 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                           <  1:7684298‑M1/50‑25 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                           >  1:8150114‑M1/1‑26 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                           >  1:4343249‑M1/1‑26 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            <  1:5277879‑M1/49‑24 (MQ=255)

                         ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct                          <  1:7220883‑M1/50‑26 (MQ=255)

                           cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         <  1:7500999‑M1/49‑27 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga                       >  1:3946912‑M1/1‑22 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga                       <  1:2805404‑M1/50‑29 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgg                        <  1:282502‑M1/49‑28 (MQ=255)

                             cTTTACATCAGAGATATACCAttccatataacggccctgtacgcctggac                      >  1:3950242‑M1/1‑21 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:3319003‑M1/1‑20 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:3297999‑M1/1‑20 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:4328474‑M1/1‑20 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgg                    <  1:6315568‑M1/49‑32 (MQ=255)

                                 aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                   >  1:4258304‑M1/1‑17 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 <  1:6044567‑M1/50‑35 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  >  1:6740350‑M1/1‑16 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  >  1:5053924‑M1/1‑16 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  >  1:1846906‑M1/1‑16 (MQ=255)

                                   aTCAGAGATATACCAttccatataacggccctgtacgcctggacggataa                <  1:6597310‑M1/50‑36 (MQ=255)

                                   aTCAGAGATATACCAttccatataacggccctgtacgcctggacggataa                <  1:1559896‑M1/50‑36 (MQ=255)

                                   aTCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 >  1:6429446‑M1/1‑15 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggataaa               <  1:3369208‑M1/50‑37 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 >  1:497612‑M1/1‑14 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 >  1:2905947‑M1/1‑14 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc             >  1:4392914‑M1/1‑12 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc             >  1:2502818‑M1/1‑12 (MQ=255)

                                       gagaTATACCAttccatataacggccctgtacgcctggacggataaagcg            <  1:7443200‑M1/50‑40 (MQ=255)

                                        agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt           >  1:238469‑M1/1‑10 (MQ=255)

                                        agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt           >  1:4812104‑M1/1‑10 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta        <  1:4758961‑M1/50‑44 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta        >  1:1127758‑M1/1‑7 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta        >  1:518780‑M1/1‑7 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta        <  1:626995‑M1/50‑44 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttacg      >  1:6272106‑M1/1‑5 (MQ=255)

                                              aCCAttccatataacggccctgtacgcctggacggataaagcgtttacgc     >  1:5546299‑M1/1‑4 (MQ=255)

                                              aCCAttccatataacggccctgtacgcctggacggataaagcgtttacgc     >  1:3287159‑M1/1‑4 (MQ=255)

                                               ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc     <  1:4092469‑M1/49‑47 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcgac  <  1:5836508‑M1/50‑50 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcgac  <  1:1725576‑M1/50‑50 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcgac  <  1:7292994‑M1/50‑50 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcga   >  1:8028474‑M1/1‑1 (MQ=255)

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG  >  NC_000913/167434‑167532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`