BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,388,889	Δ9,734 bp		ycjG–[uspE]	ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1388889	1398622	9734	123 [0]	[0] 123	ycjG–[uspE]	ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1388888	0 (0.000)	117 (1.050)	61/96	0.0	100%	intergenic (‑77/‑42)	tpx/ycjG	lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase
*	?	NC_000913	1398623 =	0 (0.000)	117 (1.050)	61/96	0.0	100%	intergenic (‑1/+151)	uspE/fnr	universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR

Only 100 of 123 total aligned reads displayed.

ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAGAA  >  NC_000913/1388840‑1388936

aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT                                                  <  1:1637548‑M1/49‑1 (MQ=255)

aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT                                                  <  1:7638185‑M1/49‑1 (MQ=255)

  gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTaca                                               <  1:1874715‑M1/50‑4 (MQ=255)

  gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa                                                 >  1:7561727‑M1/1‑47 (MQ=255)

  gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa                                                 >  1:6946750‑M1/1‑47 (MQ=255)

   tCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacag                                              <  1:4491419‑M1/50‑5 (MQ=255)

     acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg                                            >  1:7900895‑M1/1‑44 (MQ=255)

     acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg                                            <  1:463131‑M1/50‑7 (MQ=255)

     acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg                                            >  1:4513928‑M1/1‑44 (MQ=255)

     acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagg                                             <  1:7381454‑M1/49‑6 (MQ=255)

       acCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtc                                          <  1:5275946‑M1/50‑9 (MQ=255)

       acCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtc                                          >  1:8455596‑M1/1‑42 (MQ=255)

       acCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtc                                          >  1:3552768‑M1/1‑42 (MQ=255)

        ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct                                         <  1:1141655‑M1/50‑10 (MQ=255)

        ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct                                         <  1:5321991‑M1/50‑10 (MQ=255)

        ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct                                         <  1:5724050‑M1/50‑10 (MQ=255)

         cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc                                        <  1:2837614‑M1/50‑11 (MQ=255)

         cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc                                        >  1:1682674‑M1/1‑40 (MQ=255)

         cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc                                        <  1:8138908‑M1/50‑11 (MQ=255)

         cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc                                        >  1:3247831‑M1/1‑40 (MQ=255)

            gTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctt                                     <  1:6691727‑M1/50‑14 (MQ=255)

             tttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta                                    >  1:6548546‑M1/1‑36 (MQ=255)

                aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa                                 >  1:6967306‑M1/1‑33 (MQ=255)

                aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttaca                                  <  1:4806614‑M1/49‑17 (MQ=255)

                aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttaca                                  <  1:5426012‑M1/49‑17 (MQ=255)

                 tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac                                <  1:1317346‑M1/50‑19 (MQ=255)

                 tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaac                                <  1:4413863‑M1/50‑19 (MQ=255)

                 tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa                                 >  1:363563‑M1/1‑32 (MQ=255)

                    tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac                             >  1:1387663‑M1/1‑29 (MQ=255)

                     aaCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            >  1:917259‑M1/1‑28 (MQ=255)

                     aaCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            >  1:6744164‑M1/1‑28 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactg                           <  1:7847717‑M1/50‑24 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:6561425‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:4362907‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:5695275‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:3058192‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:3154654‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact                            <  1:3307136‑M1/49‑23 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac                             <  1:1412144‑M1/48‑22 (MQ=255)

                      aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac                             <  1:2163461‑M1/48‑22 (MQ=255)

                       cTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt                          <  1:979039‑M1/50‑25 (MQ=255)

                       cTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt                          <  1:2676314‑M1/50‑25 (MQ=255)

                        tGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt                          >  1:3900092‑M1/1‑25 (MQ=255)

                         gTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtc                         >  1:6099825‑M1/1‑24 (MQ=255)

                          tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaa                       >  1:8362498‑M1/1‑23 (MQ=255)

                          tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaa                       >  1:1672760‑M1/1‑23 (MQ=255)

                            aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg                     >  1:6108646‑M1/1‑21 (MQ=255)

                            aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac                      <  1:7238768‑M1/49‑29 (MQ=255)

                            aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac                      <  1:3775428‑M1/49‑29 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacagcaactgtcaacg                     >  1:7745995‑M1/1‑20 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc                    <  1:368456‑M1/50‑31 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc                    <  1:3583024‑M1/50‑31 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc                    <  1:736383‑M1/50‑31 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg                     >  1:6575887‑M1/1‑20 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg                     >  1:6278327‑M1/1‑20 (MQ=255)

                             aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg                     >  1:3061295‑M1/1‑20 (MQ=255)

                               aaCACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcag                  >  1:2752643‑M1/1‑18 (MQ=255)

                               aaCACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcag                  >  1:5209510‑M1/1‑18 (MQ=255)

                                acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt                 <  1:3907016‑M1/50‑34 (MQ=255)

                                acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt                 <  1:5917146‑M1/50‑34 (MQ=255)

                                acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt                 <  1:1402660‑M1/50‑34 (MQ=255)

                                acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagt                 <  1:43843‑M1/50‑34 (MQ=255)

                                acacAGCAAACGCTATTacagggtctccttacaacaaccgtcaacgcagt                 >  1:5673763‑M1/1‑17 (MQ=255)

                                 cacaGCAAACGCTATTgcagggtctccttacaacaactgtcaacgcagtt                <  1:7752953‑M1/50‑35 (MQ=255)

                                 cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt                <  1:6777902‑M1/50‑35 (MQ=255)

                                  acaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagttt               <  1:3451554‑M1/50‑36 (MQ=255)

                                  acaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagttt               <  1:3633838‑M1/50‑36 (MQ=255)

                                   caGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttg              >  1:35140‑M1/1‑14 (MQ=255)

                                     gCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgt             >  1:2849418‑M1/1‑12 (MQ=255)

                                      cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa           >  1:4360227‑M1/1‑11 (MQ=255)

                                      cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa           <  1:8158672‑M1/50‑40 (MQ=255)

                                      cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa           >  1:693768‑M1/1‑11 (MQ=255)

                                      cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa           <  1:2424247‑M1/50‑40 (MQ=255)

                                      cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa           <  1:4322297‑M1/50‑40 (MQ=255)

                                       aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat          >  1:4383768‑M1/1‑10 (MQ=255)

                                       aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat          <  1:6657055‑M1/50‑41 (MQ=255)

                                       aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat          <  1:4981329‑M1/50‑41 (MQ=255)

                                       aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat          >  1:4877859‑M1/1‑10 (MQ=255)

                                        aaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat          >  1:6678284‑M1/1‑9 (MQ=255)

                                         aCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaatta        <  1:7250943‑M1/50‑43 (MQ=255)

                                          cGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       <  1:7057273‑M1/50‑44 (MQ=255)

                                          cGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       <  1:6605782‑M1/50‑44 (MQ=255)

                                          cGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       <  1:3885043‑M1/50‑44 (MQ=255)

                                          cGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaatta        >  1:6471871‑M1/1‑7 (MQ=255)

                                          cGCTATTacagggtctcattacaacaactgtcaacgcagtttgtaatta        >  1:5362770‑M1/1‑7 (MQ=255)

                                           gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaaa      <  1:6982‑M1/50‑45 (MQ=255)

                                           gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:2361114‑M1/1‑6 (MQ=255)

                                             tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:4486999‑M1/1‑4 (MQ=255)

                                             tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:8598258‑M1/1‑4 (MQ=255)

                                             tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:6695300‑M1/1‑4 (MQ=255)

                                             tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:2338232‑M1/1‑4 (MQ=255)

                                             tATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:6426089‑M1/1‑4 (MQ=255)

                                              aTTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:5776192‑M1/1‑3 (MQ=255)

                                              aTTacagggtctccttacaacaactgtcaacgcagtttgtaattaa       >  1:6417038‑M1/1‑3 (MQ=255)

                                               ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat  <  1:7366143‑M1/50‑49 (MQ=255)

                                               ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaaga   <  1:6299533‑M1/49‑48 (MQ=255)

                                               ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaag    <  1:163967‑M1/48‑47 (MQ=255)

                                                tacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat  >  1:6145471‑M1/1‑1 (MQ=255)

                                                tacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat  >  1:3900913‑M1/1‑1 (MQ=255)

                                                tacagggtctccttacaacaactgtcaacgcagtttgtaattaaaagat  >  1:87931‑M1/1‑1 (MQ=255)

ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAGAA  >  NC_000913/1388840‑1388936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`