| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 129 [0] | [0] 123 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 122 (1.070) | 64/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 129 total aligned reads displayed.
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:1002873/50‑1 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:213114/50‑1 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:6620727/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:5482269/1‑50 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:6933526/1‑49 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:4390918‑M1/50‑2 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:7314222‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:8369623‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:4351877‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:5853928‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:8026190‑M1/49‑3 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:261121‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:5272783‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:7399103‑M1/50‑7 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:4795383‑M1/50‑8 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:5143146‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:6098415‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:7693925‑M1/1‑42 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:941035‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:1287665‑M1/1‑42 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:6151364‑M1/50‑10 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 1:6099233‑M1/1‑41 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:1450038‑M1/1‑39 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:7541149‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:2664476‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:3378698‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:452246‑M1/1‑38 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:5079665‑M1/1‑38 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:1129805‑M1/50‑14 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:6295616‑M1/50‑14 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:3479734‑M1/50‑14 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:4115242‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:5677349‑M1/1‑35 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:2527382‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:6097663‑M1/50‑17 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:8343975‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:7926483‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1821411‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1600941‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1923348‑M1/1‑33 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:126129‑M1/50‑19 (MQ=255) tCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:7308674‑M1/1‑31 (MQ=255) tCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:598108‑M1/1‑31 (MQ=255) tCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:3369588‑M1/1‑31 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:744486‑M1/1‑30 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:3234569‑M1/1‑30 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:5388186‑M1/1‑30 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:516049‑M1/49‑21 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:6784662‑M1/49‑21 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:3219550‑M1/1‑28 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:2886025‑M1/1‑27 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:3544243‑M1/1‑27 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:589983‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtact < 1:4318895‑M1/48‑24 (MQ=255) tATTTATAACAACACCAATGAATACtaacaatgccggacaggagtact < 1:7580323‑M1/48‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:1665576‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:846925‑M1/1‑23 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagcactat > 1:3797467‑M1/1‑23 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:1837002‑M1/1‑21 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:5714513‑M1/49‑29 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:7070652‑M1/49‑29 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:6237958‑M1/49‑29 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:1200826‑M1/1‑19 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:1303217‑M1/1‑18 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:8057627‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:6484431‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:6444021‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:1047787‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:26953‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:5304990‑M1/1‑17 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:7473367‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:5267637‑M1/50‑35 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg < 1:5731008‑M1/50‑36 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg < 1:5334806‑M1/50‑36 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:3553683‑M1/50‑37 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:5554637‑M1/50‑37 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:6152236‑M1/50‑37 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:8168489‑M1/1‑13 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:8527618‑M1/1‑11 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:3768368‑M1/1‑10 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:226929‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:883909‑M1/1‑9 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:5132758‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:5156359‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:6875076‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:6669525‑M1/50‑44 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:495579‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:746778‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:5806094‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat > 1:674226‑M1/1‑4 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat > 1:3911952‑M1/1‑4 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat > 1:1557520‑M1/1‑4 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc > 1:1877518‑M1/1‑3 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc > 1:1130471‑M1/1‑3 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:4148994‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:6766103‑M1/50‑48 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:2127316‑M1/1‑2 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg > 1:4173829‑M1/1‑1 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg < 1:2382305‑M1/50‑50 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:6793787‑M1/49‑49 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |