| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 129 [0] | [0] 123 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 122 (1.070) | 64/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 123 total aligned reads displayed.
AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 | gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:7314222‑M2/49‑49 (MQ=255)gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:5323492‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:8369623‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:4351877‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:6992978‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:5853928‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:526534‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:8026190‑M2/2‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:261121‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:7399103‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:5272783‑M2/45‑50 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:1134796‑M2/7‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:4795383‑M2/7‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:6098415‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:5143146‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:941035‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:7693925‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:8470862‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:1287665‑M2/43‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:6151364‑M2/9‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:732667‑M2/42‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:6099233‑M2/42‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:4191034‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:6256652‑M2/41‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:1450038‑M2/40‑50 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:3378698‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:2664476‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:7541149‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:452246‑M2/39‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa < 1:1129805‑M2/13‑1 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa < 1:3479734‑M2/13‑1 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:5677349‑M2/36‑48 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 1:5564703‑M2/14‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg < 1:6097663‑M2/16‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:2527382‑M2/35‑50 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAgg < 1:8343975‑M2/17‑1 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1821411‑M2/34‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1600941‑M2/34‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1923348‑M2/34‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:7926483‑M2/34‑49 (MQ=255) ttcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:3926006‑M2/33‑48 (MQ=255) tcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:598108‑M2/32‑50 (MQ=255) tcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:3369588‑M2/32‑50 (MQ=255) tcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:7308674‑M2/32‑50 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:3234569‑M2/31‑49 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:5388186‑M2/31‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:8244550‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:6784662‑M2/20‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:7885814‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:3219550‑M2/29‑50 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:2886025‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:4699132‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:3544243‑M2/28‑49 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:5101015‑M2/28‑49 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACt < 1:4318895‑M2/23‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACt < 1:5758252‑M2/23‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:1665576‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGCACTAt > 1:3797467‑M2/24‑48 (MQ=255) ttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg > 1:2554229‑M2/23‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:1837002‑M2/22‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:6237958‑M2/28‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:1607464‑M2/21‑49 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:1200826‑M2/20‑50 (MQ=255) aacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt > 1:1303217‑M2/19‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:6444021‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:1047787‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:6484431‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:5304990‑M2/18‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:7473367‑M2/34‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:5267637‑M2/34‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:5731008‑M2/35‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:6152236‑M2/36‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:5554637‑M2/36‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:3553683‑M2/36‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:6091765‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:8168489‑M2/14‑50 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:8527618‑M2/12‑49 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:226929‑M2/11‑50 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:3768368‑M2/11‑50 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:1299087‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:7476479‑M2/40‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:883909‑M2/10‑49 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:5132758‑M2/42‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:5156359‑M2/8‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:6875076‑M2/43‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:6669525‑M2/43‑1 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:495579‑M2/7‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:5806094‑M2/44‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa > 1:746778‑M2/6‑50 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 1:3911952‑M2/5‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:1877518‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:1130471‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:6766103‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:4148994‑M2/47‑1 (MQ=255) acTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg > 1:2127316‑M2/3‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:4173829‑M2/2‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 1:298808‑M2/49‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 1:664287‑M2/49‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:6793787‑M2/48‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:7627446/1‑50 (MQ=255) | AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |