| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 8 (0.070) | 92 (0.860) | 48/96 | 0.5 | 86.5% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 21 (0.200) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTC > 2:528992/1‑50TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTC > 1:4210441/1‑50TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 2:1648518/50‑1TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:4062684/50‑1TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:91050/50‑1TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:5312309/50‑1TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:1669376/50‑1 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 2:1125989/1‑49 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 1:1015797/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 2:881934/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 2:3608091/49‑1 GGTGCGTTGAAGATATGCGAGCCCCTGTAAAGTGGCGGGGATCACTCTAC < 2:4090164/50‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACC < 1:4062156/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCGCTCTACCT < 2:2616900/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:3577402/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:311803/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:5021307/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:4070344/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 2:2641510/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 2:3392292/50‑1 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCT > 1:2750015/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:2440799/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 2:1969712/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:4708599/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 2:3726674/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:1521076/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGAGGATCACTCTACCTC < 2:3177850/49‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCTACCTCca > 1:5070475/1‑48 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAA > 2:3826024/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCAACTCAAT > 1:2856119/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:4302427/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 2:3478923/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 2:5243834/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGCGAGCACTTTACCTCAAT > 2:983860/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTAACTCCATGTG > 2:3633741/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 2:1431685/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:2625502/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGTGGATCACTCTACCTCAATGTGT < 2:1453214/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTGTA > 1:3806798/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCACTGTGTA > 1:2603585/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:4995461/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCCCTCTTCCTCCATGTGTAT > 2:1491780/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:1901768/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 2:4691778/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:4561114/50‑1 ATGCGAGCACCTGTAAAGTGGCGGTGATCACTCTACCTCAATATGTATta > 2:1827705/1‑48 ATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCTACCTCCATGTGTATta > 1:5050076/1‑48 ATGCGAGCACCTGTAAAGTGGCGGGGGTCCCTCTTCCTCAATGTGTATCA > 1:46552/1‑50 ATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA > 2:2409689/1‑50 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 2:2348361/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 2:1834653/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 2:4923908/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:1987404/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 2:2669033/49‑1 GCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATTAC > 1:1696421/1‑49 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:2728865/49‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 2:3637651/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2267294/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 2:786501/50‑1 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCAATGTGTATCACAA > 2:5232787/1‑49 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 2:548417/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 2:5103290/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:1068241/50‑1 CCTGTAAAGTAGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:5223710/50‑1 CTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:3021227/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:1202151/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:5049069/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 2:77902/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:1525857/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:1836304/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:3808311/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:3234169/48‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 2:5072443/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 2:3276806/49‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG < 2:3764558/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 2:3667028/1‑50 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:2311965/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 2:3947821/50‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 2:4885327/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:4418502/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG < 1:2871499/50‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1975612/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1901724/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:5093207/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2966401/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:4116204/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 2:3700791/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:3257654/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:4242613/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:2161758/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1511440/1‑48 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 2:184291/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:3042606/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 2:222567/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 2:3736601/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:1019851/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:548867/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 2:1663488/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:2855228/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:1298000/1‑49 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |