| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 8 (0.070) | 92 (0.860) | 48/96 | 0.5 | 86.5% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 21 (0.200) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 108 total aligned reads displayed.
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 | tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTC > 2:528992‑M1/1‑50 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTC > 1:4210441‑M1/1‑50 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 2:1648518‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:91050‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:5312309‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:1669376‑M1/50‑1 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:4062684‑M1/50‑1 (MQ=255) aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 2:1125989‑M1/1‑49 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTcc < 2:1135065/49‑1 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:1015797‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 2:881934‑M1/50‑3 (MQ=255) ggTGCGTTGAAGATATGCGAGCCCCTGTAAAGTGGCGGGGATCACTCtac < 2:4090164‑M1/50‑4 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:4062156‑M1/50‑5 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCGCTCtacct < 2:2616900‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 2:2641510‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 2:3392292‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:5021307‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:4070344‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:3577402‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:311803‑M1/50‑6 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGTACTCCCCTa > 2:1376158/1‑49 (MQ=255) gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacct > 1:2750015‑M1/1‑44 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:2440799‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:1521076‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:4708599‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 2:3726674‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGAGGATCACTCtacctc < 2:3177850‑M1/49‑7 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCtacctcca > 1:5070475‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaa > 2:3826024‑M1/1‑42 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCcaactcaat > 1:2856119‑M1/1‑41 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:4302427‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 2:3478923‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 2:5243834‑M1/50‑10 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAgcgc < 2:1392477/49‑1 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtaactccatgtg > 2:3633741‑M1/1‑38 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 2:1431685‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:2625502‑M1/50‑13 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGTGGATCACTCtacctcaatgtgt < 2:1453214‑M1/50‑14 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaatgtgta > 1:3806798‑M1/1‑36 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcactgtgta > 1:2603585‑M1/1‑36 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:4995461‑M1/50‑15 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCCCTCttcctccatgtgtat > 2:1491780‑M1/1‑35 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:1901768‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 2:4691778‑M1/50‑16 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACt < 2:4450599/50‑1 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:4561114‑M1/50‑17 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGTGATCACTCtacctcaatatgtatta > 2:1827705‑M1/1‑33 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGTTACTCtacctccatgtgtatta > 1:5050076‑M1/1‑33 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca > 2:2409689‑M1/1‑33 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 2:1834653‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 2:2348361‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 2:4923908‑M1/50‑19 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca < 2:2669033‑M1/49‑18 (MQ=255) gCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtattac > 1:1696421‑M1/1‑31 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:2728865‑M1/49‑20 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 1:2267294‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 2:3637651‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaat < 2:786501‑M1/50‑22 (MQ=255) gAGCACCTGTAAAGTGGCGGGGATCACTCtaccccaatgtgtatcacaa > 2:5232787‑M1/1‑29 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 2:548417‑M1/50‑25 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 2:5103290‑M1/50‑25 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtg < 1:5190028/50‑1 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:1068241‑M1/50‑27 (MQ=255) ccTGTAAAGTAGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:5223710‑M1/50‑27 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 2:77902‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:1202151‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:5049069‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1525857‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 2:3808311‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 2:3234169‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1836304‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:711788/50‑1 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 2:5072443‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 2:3276806‑M1/49‑32 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 2:3667028‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:2311965‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg < 2:3764558‑M1/50‑36 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg < 2:3947821‑M1/50‑38 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:4418502‑M1/1‑12 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg < 1:2871499‑M1/50‑39 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1975612‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 2:5093207‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1901724‑M1/1‑11 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:4116204‑M1/1‑10 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:2966401‑M1/1‑10 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggg < 2:3700791‑M1/50‑42 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 2:3257654‑M1/1‑9 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:4242613‑M1/1‑9 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:2161758‑M1/50‑43 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:1511440‑M1/1‑8 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 2:3736601‑M1/50‑45 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 2:222567‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 2:184291‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:3042606‑M1/50‑45 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:1019851‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 2:1663488‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:548867‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:2855228‑M1/50‑47 (MQ=255) aCTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGAt < 2:949852/49‑1 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 2:1298000‑M1/1‑2 (MQ=255) | TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |