| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 8 (0.070) | 92 (0.860) | 48/96 | 0.5 | 86.5% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 21 (0.200) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 118 total aligned reads displayed.
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 | gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 2:3608091‑M2/1‑1 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTa < 1:1015797‑M2/2‑1 (MQ=255)gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTa < 2:881934‑M2/2‑1 (MQ=255) ggtgcgttgaagatatgcgagcccctgtaaagtggcggggatcactcTAc < 2:4090164‑M2/3‑1 (MQ=255) gtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTAcc < 1:4062156‑M2/4‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcgctcTACCt < 2:2616900‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 2:3392292‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:3577402‑M2/5‑1 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:5021307‑M2/5‑1 (MQ=255) gcgttgaagatatgcgagcacctgtaaagtggcggggggcactcTACCt > 1:2750015‑M2/45‑49 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCgcctacct < 1:196223/49‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 1:4708599‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 2:3726674‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 1:2440799‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcgaggatcactcTACCTc < 2:3177850‑M2/6‑1 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcgggggttactcTACctcca > 1:5070475‑M2/43‑48 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcgggggtcactcCAACTCAAt > 1:2856119‑M2/42‑50 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:4302427‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 2:5243834‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 2:3478923‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggcgagcacttTACCTCAAt > 2:983860‑M2/42‑50 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt > 2:1955809/1‑50 (MQ=255) cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgt > 1:425753/1‑50 (MQ=255) cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgt > 2:1233535/1‑50 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgtg < 2:1647000/50‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgtg > 2:3247949/1‑50 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgtg > 2:4780847/1‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcgggggtcactcTAACTCCAtgtg > 2:3633741‑M2/39‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 2:1431685‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:2625502‑M2/12‑1 (MQ=255) agatatgcgagcacctgtaaagtggcgtggatcactcTACCTCAATgtgt < 2:1453214‑M2/13‑1 (MQ=255) gatatgcgagcacctgtaaagtggcgggggtcactcTACCTCAATGTGTa > 1:3806798‑M2/37‑50 (MQ=255) gatatgcgagcacctgtaaagtggcggggatcactcTACCTCACTGTGTa > 1:2603585‑M2/37‑50 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 2:4691778‑M2/15‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:4561114‑M2/16‑1 (MQ=255) atgcgagcacctgtaaagtggcggtgatcactcTACCTCAATATGtatta > 2:1827705‑M2/34‑48 (MQ=255) atgcgagcacctgtaaagtggcgggggttactcTACCTCCATGTGtatta > 1:5050076‑M2/34‑48 (MQ=255) atgcgagcacctgtaaagtggcgggggtccctcTTCCTCAATGTGTATca > 1:46552‑M2/34‑50 (MQ=255) atgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca > 2:2409689‑M2/34‑50 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 2:1834653‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 2:2348361‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 2:4923908‑M2/18‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 2:2669033‑M2/17‑1 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:1987404‑M2/17‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATcac < 2:2917783/50‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATcaca < 1:2664360/50‑1 (MQ=255) gcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATtac > 1:1696421‑M2/32‑49 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:2728865‑M2/19‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 2:786501‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 2:3637651‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAat < 1:2267294‑M2/21‑1 (MQ=255) gagcacctgtaaagtggcggggatcactcTACCCCAATGTGTATCACaa > 2:5232787‑M2/30‑49 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAat < 1:1465572/50‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 2:548417‑M2/24‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 2:5103290‑M2/24‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:1068241‑M2/26‑1 (MQ=255) cctgtaaagtagcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:5223710‑M2/26‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATc < 1:4059976/48‑1 (MQ=255) ctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:3021227‑M2/26‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCa > 1:4216574/1‑49 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCatat < 1:1202151‑M2/29‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCatat < 1:5049069‑M2/29‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCatat < 2:77902‑M2/29‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:1525857‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 2:3808311‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 2:3234169‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:1836304‑M2/28‑1 (MQ=255) tAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCt < 1:3781192/50‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 2:5072443‑M2/32‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg < 2:3764558‑M2/35‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg < 2:3947821‑M2/37‑1 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg > 1:4418502‑M2/13‑50 (MQ=255) cggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgg < 1:2871499‑M2/38‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 2:5093207‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:1975612‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:1901724‑M2/12‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:2966401‑M2/11‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:4116204‑M2/11‑50 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggggg < 2:3700791‑M2/41‑1 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 2:3257654‑M2/10‑49 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:4242613‑M2/10‑49 (MQ=255) agcaTCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTggggg < 1:1770758/50‑1 (MQ=255) agcaTCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:5083740/1‑49 (MQ=255) gcaTCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:18110/1‑48 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:1511440‑M2/9‑48 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:2161758‑M2/42‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:3042606‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 2:3736601‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 2:222567‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 2:184291‑M2/7‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 2:1663488‑M2/46‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:1019851‑M2/5‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:548867‑M2/5‑50 (MQ=255) acctacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt < 2:3731916/49‑1 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 2:1298000‑M2/3‑49 (MQ=255) tacctCAATGTGTATCGCAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:4898310/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 2:4529394/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:453061/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 2:2005116/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3129288/1‑47 (MQ=255) | CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |