| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 366308 = | 39 (0.360) | 193 (1.880) +ACC |
73/92 | 0.0 | 68.9% | intergenic (‑3/+120) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | = 1795552 | 147 (1.340) | coding (1/300 nt) | ihfA | integration host factor subunit alpha | |||||
Only 100 of 206 total aligned reads displayed.
TTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/366351‑366308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCTTG < NC_000913/1795552‑1795504 ||| aTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATG > 1:2021178/2‑50aTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCAT < 2:4050924/48‑1 TGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGG < 1:2914341/50‑1 TGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCG < 1:405725/50‑1 TGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCG > 2:3664473/1‑50 TGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGC < 1:3582587/49‑1 TGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGC < 1:1472392/49‑1 TGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGC < 1:1727624/49‑1 GTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGC > 1:1257309/1‑50 GTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGC > 2:4333526/1‑50 TGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCT < 2:1190852/50‑1 GAATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTT < 2:4000889/49‑1 AATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC < 2:3079175/50‑1 AATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC < 2:1497455/50‑1 AATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC < 1:3211941/50‑1 ATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACA < 1:4553041/50‑1 ATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACA < 2:3946037/50‑1 ATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC > 1:4764533/1‑49 ATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC > 1:4429847/1‑49 ATTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTAC > 2:389221/1‑49 TTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA < 2:5171238/50‑1 TTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA < 1:3033575/50‑1 TTGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA < 1:1190287/50‑1 TGTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA > 2:1963222/1‑49 GTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAA < 2:1607827/49‑1 GTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAA < 1:2865210/49‑1 GTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA > 1:5101679/1‑48 GTGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAA > 2:843454/1‑48 TGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAG > 2:2003814/1‑50 TGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAG < 1:2119403/50‑1 TGAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAG < 1:207878/50‑1 GAGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGC > 1:1003251/1‑50 AGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCT < 2:2115279/50‑1 AGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCT < 1:4193418/50‑1 AGCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCT > 2:4974087/1‑50 GCGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCT > 2:1728368/1‑49 CGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGA < 2:2965303/50‑1 CGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGA < 1:2157926/50‑1 CGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGA < 1:5384183/50‑1 CGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTG > 2:1560422/1‑49 CGGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTG > 2:901800/1‑49 GGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAA < 1:1998575/50‑1 GGATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGA > 2:4883396/1‑49 GATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAA > 2:4792959/1‑50 GATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAA < 1:1609449/50‑1 GATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAA < 2:5125435/50‑1 ATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAAT < 1:4994214/50‑1 ATAACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAAT > 2:4448753/1‑50 ACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTC < 1:223920/50‑1 ACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTC < 1:1530064/50‑1 ACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTC < 2:5346652/50‑1 ACAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTC < 1:4784022/50‑1 CAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCA < 2:4689705/50‑1 CAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCA < 2:2576286/50‑1 CAATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGT > 2:1843517/1‑48 AATTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAG < 2:2349274/50‑1 TTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAA < 1:3158962/50‑1 TTTCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAA < 2:4870636/50‑1 TCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATA > 2:606072/1‑50 TCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAAT < 2:4599451/49‑1 TCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAAT < 2:3412907/49‑1 TCACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAAT < 1:586449/49‑1 CACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATAT > 2:2829678/1‑50 CACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATA < 1:528443/49‑1 ACACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATC > 1:1947010/1‑50 CACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCT > 1:1389894/1‑50 CACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCT < 2:144224/50‑1 CACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCT < 2:1010796/50‑1 ACAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTG < 2:3603717/50‑1 CAGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGT > 2:2800874/1‑50 AGGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCAGTT > 1:4357430/1‑50 GGAATCAGACCATGGCGCGTACAAAAGCTGAAATGTCAGAATATCTGTTT < 1:3670074/50‑1 GGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTT < 2:2907573/50‑1 GGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTT < 1:4359710/50‑1 GGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTT < 2:3473995/50‑1 GGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTT < 1:646441/50‑1 GGAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGGTT < 2:2429506/50‑1 GAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTG < 1:4116929/50‑1 GAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTG < 1:964107/50‑1 GAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTG < 1:788524/50‑1 GAAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTT > 1:5230948/1‑49 AAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGA < 2:3551006/50‑1 AAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGA < 2:3047895/50‑1 AAACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGA > 2:1798127/1‑50 AACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGAT < 2:817226/50‑1 ACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATA < 2:1684442/50‑1 ACAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGAT > 2:234285/1‑49 CAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAA < 1:4756877/50‑1 CAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGAT > 1:5157278/1‑48 CAGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGAT > 2:2257109/1‑48 AGACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAG < 2:3362049/50‑1 GACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGC > 1:1054894/1‑50 GACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGC > 1:3719241/1‑50 ACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCT < 1:1929776/50‑1 ACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCT < 1:4952645/50‑1 ACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCT > 1:2529267/1‑50 ACCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCT > 1:2471718/1‑50 CCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCTT > 2:272807/1‑50 CCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCTT > 1:2668200/1‑50 CCATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCTT > 2:3781363/1‑50 ||| TTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/366351‑366308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGCGCTTACAAAAGCTGAAATGTCAGAATATCTGTTTGATAAGCTTG < NC_000913/1795552‑1795504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |