| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 366308 = | 39 (0.360) | 193 (1.880) +ACC |
73/92 | 0.0 | 68.9% | intergenic (‑3/+120) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | = 1795552 | 147 (1.340) | coding (1/300 nt) | ihfA | integration host factor subunit alpha | |||||
Only 100 of 363 total aligned reads displayed.
CCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTAC > NC_000913/1795503‑1795601 | ccAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCAt < 1:852352/50‑1 (MQ=255)ccAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCAt > 1:3992596/1‑50 (MQ=255) cAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATa < 2:3956326/50‑1 (MQ=255) aaGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATgg < 2:3586918‑M2/50‑3 (MQ=255) aaGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAg > 1:4777523/1‑50 (MQ=255) aGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggt < 1:4952645‑M2/50‑4 (MQ=255) aGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAgg < 2:4537396/50‑1 (MQ=255) gCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtc > 1:1054894‑M2/1‑46 (MQ=255) cTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtct > 2:933215‑M2/1‑45 (MQ=255) cTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtct < 2:2115730‑M2/50‑6 (MQ=255) cTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtct < 2:3362049‑M2/50‑6 (MQ=255) cTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGtt > 1:2555208/1‑50 (MQ=255) ttATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctg < 1:2927531‑M2/50‑7 (MQ=255) ttATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctg < 1:4756877‑M2/50‑7 (MQ=255) tATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgt < 2:3068323‑M2/50‑8 (MQ=255) aTCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgt > 2:2758464‑M2/1‑42 (MQ=255) tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgttt < 2:1510690‑M2/50‑10 (MQ=255) tCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCaa < 2:1203471/49‑1 (MQ=255) cAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttc < 2:1969731‑M2/50‑11 (MQ=255) cAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttc < 1:964107‑M2/50‑11 (MQ=255) cAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATc > 1:3515034/1‑50 (MQ=255) cAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATc > 1:4429579/1‑50 (MQ=255) cAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATc > 2:5099057/1‑50 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcc < 1:646441‑M2/50‑12 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcc < 1:4089780‑M2/50‑12 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcc < 2:3473995‑M2/50‑12 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATcc > 1:3685797/1‑50 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATcc > 1:1589266/1‑50 (MQ=255) aaaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATc < 2:3935416/49‑1 (MQ=255) aaCTGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcct > 1:4357430‑M2/1‑38 (MQ=255) aaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcct < 1:2195915‑M2/50‑13 (MQ=255) aaCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcct > 2:4174915‑M2/1‑38 (MQ=255) aCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCt < 2:2649689/50‑1 (MQ=255) aCAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCt < 1:3734694/50‑1 (MQ=255) cAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTc < 1:1264300/50‑1 (MQ=255) aGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCa < 1:5260355/50‑1 (MQ=255) gATATTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgt < 2:3616743‑M2/50‑17 (MQ=255) atatTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtg > 2:2829678‑M2/1‑33 (MQ=255) atatTCTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtg > 2:4688119‑M2/1‑33 (MQ=255) tatTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAat > 1:5195779/1‑49 (MQ=255) ttCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatgat < 2:2202559/50‑1 (MQ=255) ttCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatga < 2:2944160/49‑1 (MQ=255) tCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatgatg > 1:4821217/1‑50 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaatt < 1:1874592‑M2/50‑23 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaatt < 2:2349274‑M2/50‑23 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaatt < 2:108643‑M2/50‑23 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatgatg < 2:1707596/49‑1 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatgatg < 2:1390456/49‑1 (MQ=255) cTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAatgatg < 1:1689430/49‑1 (MQ=255) tGACATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattg < 2:2470640‑M2/50‑24 (MQ=255) aCATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaatt > 1:2505214‑M2/1‑25 (MQ=255) aCATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTg > 1:2142540/1‑50 (MQ=255) aCATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTg > 2:1749405/1‑50 (MQ=255) aCATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTg < 2:5362144/50‑1 (MQ=255) cATTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgtta > 2:4021991‑M2/1‑24 (MQ=255) cATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTgg < 2:4793012/50‑1 (MQ=255) aTTTCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttat > 2:4448753‑M2/1‑23 (MQ=255) tttCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGaa > 1:591090/1‑50 (MQ=255) ttCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatcc < 1:1998575‑M2/50‑30 (MQ=255) tCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccg < 1:5384183‑M2/50‑31 (MQ=255) tCAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatcc > 2:4883396‑M2/1‑20 (MQ=255) tCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATc > 2:4110176/1‑50 (MQ=255) cAGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccg > 2:1488262‑M2/1‑19 (MQ=255) cAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATc < 1:2427201/49‑1 (MQ=255) aGCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgct < 1:4193418‑M2/50‑33 (MQ=255) aGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGc > 2:1243946/1‑50 (MQ=255) gCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctc > 1:1003251‑M2/1‑17 (MQ=255) gCTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgct < 1:5090507‑M2/49‑33 (MQ=255) gCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGct < 2:3811549/50‑1 (MQ=255) cTTTTGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctca < 1:207878‑M2/50‑35 (MQ=255) cTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGctc < 2:1830727/50‑1 (MQ=255) cTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGctc < 2:3011674/50‑1 (MQ=255) cTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGctc > 2:3178744/1‑50 (MQ=255) ttttGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGctct > 1:3072436/1‑50 (MQ=255) tttGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcac < 2:1607827‑M2/49‑36 (MQ=255) tttGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcac < 1:2865210‑M2/49‑36 (MQ=255) ttGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcacaa < 1:1190287‑M2/50‑38 (MQ=255) ttGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcac > 2:843454‑M2/1‑13 (MQ=255) tGTAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcacaat < 1:4553041‑M2/50‑39 (MQ=255) tGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCttt > 1:1944931/1‑49 (MQ=255) tAAGCGCCATggtctgtttcctgtgtgaaattgttatccgctcacaattc < 2:5189835‑M2/50‑41 (MQ=255) tAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTaa < 1:2280752/50‑1 (MQ=255) tAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTaa > 2:4755998/1‑50 (MQ=255) aaGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAAt > 1:5116143/1‑50 (MQ=255) aGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATg > 2:610407/1‑50 (MQ=255) aGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATg < 2:2304553/50‑1 (MQ=255) gcgcCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGc < 1:2678873/50‑1 (MQ=255) cgcCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGcc < 2:1885973/50‑1 (MQ=255) cgcCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGcc > 1:3620841/1‑50 (MQ=255) gcCATggtctgtttcctgtgtgaaattgttatccgctcacaattccaca < 1:143632‑M2/49‑45 (MQ=255) gcCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCct < 1:260817/50‑1 (MQ=255) gcCATAGGGTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCct > 1:3574011/1‑50 (MQ=255) ccATggtctgtttcctgtgtgaaattgttatccgctcacaattccacaca < 1:3193900‑M2/50‑47 (MQ=255) cATggtctgtttcctgtgtgaaattgttatccgctcacaattccacacat > 1:2021178‑M2/1‑3 (MQ=255) cATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCctct < 1:3247311/50‑1 (MQ=255) cATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCctct < 2:4976095/50‑1 (MQ=255) cATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCctc > 1:4462187/1‑49 (MQ=255) cATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCctc > 1:4643481/1‑49 (MQ=255) aTggtctgtttcctgtgtgaaattgttatccgctcacaattccacacat < 2:720890‑M2/49‑48 (MQ=255) tAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTa > 1:153077/1‑49 (MQ=255) | CCAAGCTTATCAAACAGATATTCTGACATTTCAGCTTTTGTAAGCGCCATAGGTTCAATCCCTCAATGATGCCTGGAATCGCTCTTTTAATGCCTCTAC > NC_000913/1795503‑1795601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |