| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 366308 = | 39 (0.360) | 193 (1.880) +ACC |
73/92 | 0.0 | 68.9% | intergenic (‑3/+120) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | = 1795552 | 147 (1.340) | coding (1/300 nt) | ihfA | integration host factor subunit alpha | |||||
Only 100 of 233 total aligned reads displayed.
TCACGACGTTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACG > NC_000913/366259‑366357 | tCACGACGTTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGc > 1:3392784/1‑50 (MQ=255) cttatcaaacagatattctgacatttcagcttttgtaagcgccatggtCt < 2:2115730‑M1/2‑1 (MQ=255) cttatcaaacagatattctgacatttcagcttttgtaagcgccatggtCt < 2:3362049‑M1/2‑1 (MQ=255) cttatcaaacagatattctgacatttcagcttttgtaagcgccatggtCt < 1:2145890‑M1/2‑1 (MQ=255) ttatcaaacagatattctgacatttcagcttttgtaagcgccatggtCTg < 2:1596474‑M1/3‑1 (MQ=255) ttatcaaacagatattctgacatttcagcttttgtaagcgccatggtCTg < 2:354907‑M1/3‑1 (MQ=255) tatcaaacagatattctgacatttcagcttttgtaagcgccatggtCTGt < 2:1684442‑M1/4‑1 (MQ=255) atcaaacagatattctgacatttcagcttttgtaagcgccatggtCTGtt < 2:4862654‑M1/5‑1 (MQ=255) atcaaacagatattctgacatttcagcttttgtaagcgccatggtCTGt > 2:2318343‑M1/46‑49 (MQ=255) tcaaacagatattctgacatttcagcttttgtaagcgccatggtCTGttt < 2:1510690‑M1/6‑1 (MQ=255) tcaaacagatattctgacatttcagcttttgtaagcgccatggtCTGtt > 2:4519847‑M1/45‑49 (MQ=255) acgTTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGttt < 1:4615800/50‑1 (MQ=255) caaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTc < 1:2094605‑M1/7‑1 (MQ=255) caaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTc < 2:842064‑M1/7‑1 (MQ=255) caaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTc < 1:1244727‑M1/7‑1 (MQ=255) caaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTc < 2:1969731‑M1/7‑1 (MQ=255) caaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTc < 1:788524‑M1/7‑1 (MQ=255) aaacagatattctgacatttcagcttttgtacgcgccatggtCTGATTcc < 1:3670074‑M1/8‑1 (MQ=255) aaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTcc < 1:4359710‑M1/8‑1 (MQ=255) aaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTcc < 1:4089780‑M1/8‑1 (MQ=255) aaacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTcc < 2:2805644‑M1/8‑1 (MQ=255) ttGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCt < 2:2791992/50‑1 (MQ=255) aactgatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCt > 1:4357430‑M1/42‑50 (MQ=255) aacagatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCt < 1:2195915‑M1/9‑1 (MQ=255) cagatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgt < 2:3603717‑M1/11‑1 (MQ=255) cagatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgt < 2:2874782‑M1/11‑1 (MQ=255) agatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtg > 1:1389894‑M1/39‑50 (MQ=255) agatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtg < 2:1010796‑M1/12‑1 (MQ=255) gatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtgt < 1:2289029‑M1/13‑1 (MQ=255) gatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtgt < 1:2068164‑M1/13‑1 (MQ=255) gatattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtgt > 1:1947010‑M1/38‑50 (MQ=255) atattctgacatttcagcttttgtaagcgccatggtCTGTTTCCtgtgtg > 2:4688119‑M1/37‑50 (MQ=255) aaCGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCtgtgtg > 2:1756353/1‑49 (MQ=255) aaCGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGa < 1:3242407/50‑1 (MQ=255) attctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGa < 2:550689‑M1/15‑1 (MQ=255) attctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGa < 2:3412907‑M1/15‑1 (MQ=255) ttctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGaaa < 1:2007147‑M1/17‑1 (MQ=255) ttctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGaaa < 1:3158962‑M1/17‑1 (MQ=255) ttctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGaa > 1:5283943‑M1/34‑49 (MQ=255) tctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAAt < 2:4404938‑M1/18‑1 (MQ=255) ctgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAAtt < 2:2349274‑M1/19‑1 (MQ=255) acgGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAAtt < 2:1927285/50‑1 (MQ=255) tgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTg < 2:2470640‑M1/20‑1 (MQ=255) tgacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTg < 1:4759723‑M1/20‑1 (MQ=255) cgGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTg < 2:693461/50‑1 (MQ=255) gacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGt < 1:4184539‑M1/21‑1 (MQ=255) gacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGt < 1:4784022‑M1/21‑1 (MQ=255) gacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGt < 1:3700221‑M1/21‑1 (MQ=255) gacatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGt < 1:1530064‑M1/21‑1 (MQ=255) acatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTg > 2:1843517‑M1/29‑48 (MQ=255) acatttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGtt > 2:2908655‑M1/29‑50 (MQ=255) atttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTAt < 1:4994214‑M1/24‑1 (MQ=255) atttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTAt > 2:4047384‑M1/27‑50 (MQ=255) tttcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATc > 2:4792959‑M1/26‑50 (MQ=255) tcagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCg < 1:5384183‑M1/27‑1 (MQ=255) cagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCg > 2:1488262‑M1/23‑49 (MQ=255) cagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCg > 2:901800‑M1/23‑49 (MQ=255) cagcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGc < 1:5168061‑M1/28‑1 (MQ=255) agcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCt > 2:4974087‑M1/22‑50 (MQ=255) gcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTc > 1:1003251‑M1/21‑50 (MQ=255) gcttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTc > 1:579988‑M1/21‑50 (MQ=255) ggcGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTc < 1:1670588/47‑1 (MQ=255) cttttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTca > 1:1080335‑M1/20‑50 (MQ=255) gcGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTcac < 1:4975859/49‑1 (MQ=255) tttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTcac < 1:2865210‑M1/32‑1 (MQ=255) cGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTcac < 2:4296881/49‑1 (MQ=255) ttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACaa < 1:3033575‑M1/34‑1 (MQ=255) ttgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACaa < 2:4881548‑M1/34‑1 (MQ=255) tgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt < 1:4553041‑M1/35‑1 (MQ=255) tgtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt < 2:3946037‑M1/35‑1 (MQ=255) tAATCATGATCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt < 1:259/50‑1 (MQ=255) gtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAtt < 2:3079175‑M1/36‑1 (MQ=255) gtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAtt < 2:5140426‑M1/36‑1 (MQ=255) gtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt > 1:927427‑M1/15‑49 (MQ=255) gtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt > 2:389221‑M1/15‑49 (MQ=255) gtaagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAt > 1:4429847‑M1/15‑49 (MQ=255) taagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTc < 2:5189835‑M1/37‑1 (MQ=255) taagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCCCACAATTc < 2:2713412‑M1/37‑1 (MQ=255) aTCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAAtt < 2:705081/49‑1 (MQ=255) aTCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTc < 2:4128143/50‑1 (MQ=255) aTCATGGTCATAGCTGTCTCCTGTGTGAAATTGTTATCGGCTCACAATTc > 2:2079892/1‑50 (MQ=255) aagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTc < 2:1241322‑M1/37‑1 (MQ=255) aagcgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTc < 2:4000889‑M1/37‑1 (MQ=255) aTGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCca > 1:3327917/1‑49 (MQ=255) cgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca < 1:1037397‑M1/41‑1 (MQ=255) cgccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca > 2:3664473‑M1/10‑50 (MQ=255) ggTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca > 2:1716651/1‑49 (MQ=255) gccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca < 1:3582587‑M1/41‑1 (MQ=255) gccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca < 1:1727624‑M1/41‑1 (MQ=255) gccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcaca < 1:1472392‑M1/41‑1 (MQ=255) ccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcacaca > 2:1105954‑M1/8‑50 (MQ=255) ccatggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCcacaca < 1:2914341‑M1/43‑1 (MQ=255) catggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTccacacat > 2:3032745‑M1/7‑49 (MQ=255) catggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTccacacat < 1:5138536‑M1/44‑2 (MQ=255) taTAGCTGTTTTCTGTGAGAAATTGTTATCCGCCCACAATTCCACacaa > 2:2424357/2‑49 (MQ=38) atggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTccacacat < 1:72288‑M1/44‑2 (MQ=255) atggtCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTccacacat < 1:614571‑M1/44‑2 (MQ=255) tAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACacaaca > 1:3797315/1‑49 (MQ=255) gCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATAc < 2:877547/50‑1 (MQ=255) cTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACg < 1:2687338/50‑1 (MQ=255) | TCACGACGTTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACG > NC_000913/366259‑366357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |