| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 14 (0.130) | 92 (0.860) | 51/96 | 0.3 | 87.7% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 12 (0.110) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 CGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:3945704/1‑50 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 2:4780994/50‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 2:3650199/50‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 2:941038/49‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATA < 2:5231648/50‑1 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2188649/1‑48 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1387731/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:4825703/1‑50 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 2:4393641/1‑50 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:397957/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 2:3002770/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 2:4897504/1‑49 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:3559305/1‑49 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:4475992/50‑1 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:4925428/1‑49 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 2:2541662/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:775808/1‑50 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:3543593/50‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA < 2:3347625/49‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:3523259/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 2:3495905/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:5301574/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 2:4588166/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 2:379399/1‑49 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 2:3354263/49‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:1357982/49‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:3526918/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 2:4748594/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCACTCAAACC > 2:2430549/1‑50 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:3249793/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 2:3841123/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 2:2055733/1‑50 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 2:1171760/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 1:3457863/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 2:2992549/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCG < 2:4914007/50‑1 CTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC > 2:1549312/1‑49 TGCGCTATCAGGGTAAA‑TTATAGTCATCGGAATTATAGCAACCAAACCG > 2:5159126/1‑49 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAG < 1:3561591/50‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAA < 2:4428842/49‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 2:3526999/1‑50 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 2:4076041/1‑50 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:4342823/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:2294611/1‑50 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCAC < 2:731837/49‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 2:744856/48‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 2:185872/50‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 2:3351217/50‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA > 2:487379/1‑50 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACAT < 1:4117944/49‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACAT < 2:415631/49‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:604775/1‑50 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 2:899586/50‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG < 1:2008474/50‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 2:1685014/1‑50 GGTAAA‑TTATAGTCAGCGGTATTATAGCAATCAAACCGAAGCCACATATG < 2:4115342/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 2:2561702/50‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 2:5089365/50‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 1:584497/48‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 2:3104574/48‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGC < 2:2601551/47‑1 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG < 2:4765929/49‑1 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC < 2:2542064/50‑1 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC < 1:3805376/50‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:2846870/1‑49 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:2733263/49‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:1160149/49‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 2:1428439/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:2451521/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:521028/1‑47 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:4171450/1‑46 AGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 2:1513045/1‑46 GTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGA < 1:4503419/49‑1 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT > 1:1866150/1‑50 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT < 2:1610992/50‑1 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT < 1:2269212/50‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 2:4062606/49‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 2:5372963/49‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 1:909181/49‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 2:798921/50‑1 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:2896575/1‑49 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:5029706/1‑49 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:842018/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 2:5063639/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:3488608/1‑50 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 2:1219555/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 2:4754210/49‑1 GGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTG < 1:764454/49‑1 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:2145153/1‑49 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 2:2239043/1‑49 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA < 2:4382135/50‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 2:1732853/49‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 2:3062455/49‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:2756828/49‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:4351247/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 2:2924973/49‑1 CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765157‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |