| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 14 (0.130) | 92 (0.860) | 51/96 | 0.3 | 87.7% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 12 (0.110) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 110 total aligned reads displayed.
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765157‑765255 | cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 2:3945704‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 2:3650199‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 2:4780994‑M1/50‑2 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTaa < 1:2303395/50‑1 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 2:5231648‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2188649‑M1/1‑48 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:4825703‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1387731‑M1/1‑47 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 2:4393641‑M1/1‑47 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 2:3002770‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc < 1:397957‑M1/50‑5 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 2:4897504‑M1/1‑46 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:3559305‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:4475992‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:4925428‑M1/1‑45 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 2:2541662‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:775808‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 2:3347625‑M1/49‑7 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 2:4588166‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:5301574‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:3523259‑M1/50‑9 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 2:379399‑M1/1‑42 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:1357982‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 2:3354263‑M1/49‑10 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:3526918‑M1/49‑10 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 2:4748594‑M1/49‑12 (MQ=255) gCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCgg < 1:3603862/50‑1 (MQ=255) gCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCg < 2:2925980/49‑1 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcactcaaacc > 2:2430549‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:1171760‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:3249793‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 2:3841123‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:2055733‑M1/1‑37 (MQ=255) cTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGc > 2:238981/1‑50 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 2:2992549‑M1/50‑15 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg < 1:3457863‑M1/50‑15 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 2:1549312‑M1/1‑36 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGAATTAtagcaaccaaaccg > 2:5159126‑M1/1‑35 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag < 1:3561591‑M1/50‑18 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa < 2:4428842‑M1/49‑17 (MQ=255) gcTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCtata < 1:4273422/50‑1 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 2:4076041‑M1/1‑32 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 2:3526999‑M1/1‑32 (MQ=255) cTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTatat < 1:3788652/50‑1 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:4342823‑M1/1‑30 (MQ=255) tCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCa < 2:3657897/50‑1 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:2294611‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac < 2:731837‑M1/49‑22 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 2:744856‑M1/48‑21 (MQ=255) aGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCaaa < 2:102408/50‑1 (MQ=255) aGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCaaa > 2:4107824/1‑50 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 2:3351217‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata > 2:487379‑M1/1‑26 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 2:185872‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat < 1:4117944‑M1/49‑24 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 2:899586‑M1/50‑26 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:2008474‑M1/50‑27 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg > 2:1685014‑M1/1‑24 (MQ=255) ggTAAA‑TTATAGTCAGCGGTATTAtagcaatcaaaccgaagccacatatg < 2:4115342‑M1/50‑27 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 2:5089365‑M1/50‑28 (MQ=255) aaTTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCg < 1:5201604/50‑1 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg < 1:584497‑M1/48‑31 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcg < 2:3104574‑M1/48‑31 (MQ=255) aattatAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgc < 2:2601551‑M1/47‑30 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg < 2:4765929‑M1/49‑32 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc < 2:2542064‑M1/50‑33 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc < 1:3805376‑M1/50‑33 (MQ=255) ttATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGAc > 1:2745210/1‑49 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2846870‑M1/1‑17 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 1:1160149‑M1/49‑34 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 2:1428439‑M1/49‑34 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcc < 1:2733263‑M1/49‑34 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:521028‑M1/1‑15 (MQ=255) taGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATc < 1:4812613/50‑1 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:4171450‑M1/1‑14 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 2:1513045‑M1/1‑14 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccaga < 1:4503419‑M1/49‑37 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:2269212‑M1/50‑39 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt > 1:1866150‑M1/1‑12 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg < 2:4062606‑M1/49‑40 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg < 2:5372963‑M1/49‑40 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattg < 1:909181‑M1/49‑40 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt < 2:798921‑M1/50‑42 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:2896575‑M1/1‑8 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:5029706‑M1/1‑8 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:3488608‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:842018‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 2:5063639‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 2:4754210‑M1/49‑43 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 2:1219555‑M1/49‑43 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:764454‑M1/49‑43 (MQ=255) ggTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTaaa < 2:2217077/49‑1 (MQ=255) ggTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAat < 2:708244/50‑1 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:2145153‑M1/1‑6 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 2:2239043‑M1/1‑6 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa < 2:4382135‑M1/50‑48 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 2:3062455‑M1/49‑47 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 2:1732853‑M1/49‑47 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaa < 1:2756828‑M1/49‑47 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaag < 2:2924973‑M1/49‑49 (MQ=255) | CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCCA > NC_000913/765157‑765255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |