| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 14 (0.130) | 92 (0.860) | 51/96 | 0.3 | 87.7% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 12 (0.110) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 110 total aligned reads displayed.
CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 | gcgatgattttcgctgcgctatcagggtaaattatagtcatcggtattat < 2:4780994‑M2/1‑1 (MQ=255)gcgatgattttcgctgcgctatcagggtaaattatagtcatcggtattat < 2:3650199‑M2/1‑1 (MQ=255) cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 2:5231648‑M2/2‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:4825703‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:1387731‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 2:4393641‑M2/48‑50 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 2:4897504‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:3559305‑M2/47‑49 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:397957‑M2/4‑1 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 2:3002770‑M2/4‑1 (MQ=255) ttttACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAg < 1:1181505/48‑1 (MQ=255) ttttACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAg < 2:1484782/48‑1 (MQ=255) ttttACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGc < 2:5180809/49‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc > 1:4925428‑M2/46‑49 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:4475992‑M2/5‑1 (MQ=255) tttACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCa < 1:3573661/49‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa < 2:3347625‑M2/6‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:775808‑M2/44‑50 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt < 1:3543593‑M2/7‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 2:379399‑M2/43‑49 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:3523259‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 2:3495905‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 1:5301574‑M2/8‑1 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc < 2:4588166‑M2/8‑1 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa < 2:3354263‑M2/9‑1 (MQ=255) ttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCa < 1:1357982‑M2/9‑1 (MQ=255) ccGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCaaa < 1:1832005/50‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaaa < 2:4748594‑M2/11‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCACTCAAAcc > 2:2430549‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:3249793‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 2:2055733‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 2:1171760‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 2:3841123‑M2/13‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 2:1549312‑M2/37‑49 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg < 2:2992549‑M2/14‑1 (MQ=255) ctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCg < 1:3457863‑M2/14‑1 (MQ=255) tgcgctatcagggtaaattatagtcatcggaattaTAGCAACCAAACCg > 2:5159126‑M2/36‑49 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGaa < 2:4428842‑M2/16‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:3561591‑M2/17‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 2:4076041‑M2/33‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 2:3526999‑M2/33‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:2294611‑M2/29‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcac < 2:731837‑M2/21‑1 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca < 2:744856‑M2/20‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata < 2:185872‑M2/24‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 2:487379‑M2/27‑50 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACat < 2:415631‑M2/23‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACat < 1:4117944‑M2/23‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:604775‑M2/26‑50 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg > 2:1685014‑M2/25‑50 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg < 1:2008474‑M2/26‑1 (MQ=255) ggtaaattatagtcagcggtattaTAGCAATCAAACCGAAGCCACATATg < 2:4115342‑M2/26‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 2:5089365‑M2/27‑1 (MQ=255) gtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgc < 2:2561702‑M2/27‑1 (MQ=255) cAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATgcgc < 1:4891078/49‑1 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATgcgc < 2:2601551‑M2/29‑1 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg < 2:3104574‑M2/30‑1 (MQ=255) attatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCgg < 2:4765929‑M2/31‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 1:3805376‑M2/32‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 2:2542064‑M2/32‑1 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:2846870‑M2/18‑49 (MQ=255) tACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGc > 2:2250516/1‑48 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc < 1:1160149‑M2/33‑1 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc < 2:1428439‑M2/33‑1 (MQ=255) atagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGcc < 1:2733263‑M2/33‑1 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:521028‑M2/16‑47 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa < 1:2451521‑M2/34‑1 (MQ=255) ccGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:3797590/1‑46 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 2:1513045‑M2/15‑46 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:4171450‑M2/15‑46 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGa < 1:4503419‑M2/36‑1 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt > 1:1866150‑M2/13‑50 (MQ=255) tcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAtt < 2:1610992‑M2/38‑1 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg < 2:5372963‑M2/39‑1 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg < 1:909181‑M2/39‑1 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg < 2:4062606‑M2/39‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 2:798921‑M2/41‑1 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:2896575‑M2/9‑49 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:5029706‑M2/9‑49 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:764454‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 2:1219555‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 2:4754210‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:3488608‑M2/8‑50 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:842018‑M2/8‑50 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 2:5063639‑M2/8‑50 (MQ=255) gCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 2:1709990/48‑1 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 2:2239043‑M2/7‑49 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:2145153‑M2/7‑49 (MQ=255) ccTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc < 2:758844/50‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa < 2:4382135‑M2/47‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 2:1732853‑M2/46‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 1:2756828‑M2/46‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 2:3062455‑M2/46‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaa < 1:4351247‑M2/46‑1 (MQ=255) aaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 1:1998668/50‑1 (MQ=255) aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAg < 2:2924973‑M2/48‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:1382185/50‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:4028386/49‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 2:2661616/49‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:4694319/49‑1 (MQ=255) | CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |