| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 9 (0.080) | 59 (0.540) | 42/98 | 1.1 | 84.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 12 (0.110) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCCGCTCGGT > 1:4868775/1‑50 ATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTT > 1:4378328/1‑50 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:1120365/49‑1 GCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGTTCCG > 2:3953197/1‑50 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT < 2:1876850/50‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG < 2:2344993/49‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGGTCGGTTCCGTA > 2:3277544/1‑49 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:3562114/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGGAAC > 2:490030/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAAC > 1:2516190/1‑50 AGAAACTTCTCGAGGAACTGGCGGGGGGGAGGCTGCTCGGTTCCGTAACG > 2:4988417/1‑50 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGTTCCGTAACGT > 2:1735932/1‑50 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCCCGGTTCCGTAACGTT > 2:957217/1‑50 AAACTTCTCGAGGAACTGGCGGGGGGGAGGCTGCTCGGTTCCGTAACGTT > 2:2356473/1‑50 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:1165991/50‑1 ACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTTTA > 2:3422014/1‑50 CTTCTCGAGGAACTGGCGGGGGCGGGGCTGCTCGGTTCCGTAACGTTTAT > 2:481654/1‑50 TCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCA > 1:4198672/1‑50 TCTCGAGGAACTGGCGGGAGCGAGGCTGCTCGGTTCCCCAACGCTTATtt > 2:4714175/1‑48 TCGAGGAACTGGCGGGTTCGGGGCTGCTCGGGTCCGTAACGCTTATCATG > 2:4020820/1‑50 TCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG > 2:1915767/1‑50 CGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTTTATCATGT > 2:2329171/1‑50 CGAGGAACTGGCGGGGGCGAGGCTTCTCGGTTCCGTAACGTTTTTCATGT > 2:3555821/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT < 2:2677362/49‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT < 2:543423/49‑1 GAGGAACTGGCGGGGGGGAGGCTGCTCCGTTCCGTAACGTTTATCATGT > 2:4782881/1‑49 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 2:1337446/50‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:2373236/50‑1 GAACTGGCGGGGGCGAGGCTGCTCGGGTCCGTAACGTTTATCATGTTATC > 2:3323437/1‑50 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:4391803/1‑50 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 2:2955670/1‑50 ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT < 1:1699267/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:1372068/1‑49 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:3927244/1‑48 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 2:337826/1‑48 TGGCGGGTGCGAGGCTGCTCGGATCCGTAACGTTTATCATGTTATCCT > 2:1040042/1‑48 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAA < 2:1369367/48‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:4925827/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:3899273/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 2:4460054/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 2:3510235/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:1691739/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 2:228455/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 2:1054389/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:3038053/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:2747181/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 2:3791152/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:4659796/50‑1 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAA < 1:4761245/50‑1 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:2410415/1‑49 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:1030956/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 2:4847669/1‑50 TCGGTTCCGTAACGCTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 2:2649863/1‑50 CGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTCTCCGAAAAATAA > 2:2852622/1‑49 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:4402284/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 2:2122041/1‑50 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 2:3865821/50‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:4099642/1‑50 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:651372/1‑50 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |