| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 9 (0.080) | 59 (0.540) | 42/98 | 1.1 | 84.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 12 (0.110) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023630‑2023727 | tattgcagcagaaacttctcgaggaactggcgggggcgaggccgctcggt > 1:4868775‑M2/50‑50 (MQ=255)aaTTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCAATTAATATAAt < 1:4603105/50‑1 (MQ=255) attgcagcagaaacttctcgaggaactggcgggggcgaggctgctcggtt > 1:4378328‑M2/49‑50 (MQ=255) tttttAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTc < 1:1033311/50‑1 (MQ=255) tttAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTcc < 1:3086173/49‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc < 1:1120365‑M2/4‑1 (MQ=255) gcagcagaaacttctcgaggaactggcgggggcgcggctgctcggTTCCg > 2:3953197‑M2/46‑50 (MQ=255) cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCg < 2:2344993‑M2/5‑1 (MQ=255) cagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGt < 2:1876850‑M2/6‑1 (MQ=255) gcagaaacttctcgaggaactggcgggtgcgaggctggtcggTTCCGTa > 2:3277544‑M2/43‑49 (MQ=255) aaTTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTaa > 2:414344/1‑50 (MQ=255) cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAAc < 1:3562114‑M2/9‑1 (MQ=255) cagaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGGAAc > 2:490030‑M2/42‑50 (MQ=255) cagaaacttctcgaggaactggcgggtgcgaggctgctcggGTCCGTAAc > 1:2516190‑M2/42‑50 (MQ=255) aTTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAAc < 2:1430338/50‑1 (MQ=255) aTTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAAc < 1:76113/50‑1 (MQ=255) agaaacttctcgaggaactggcgggggggaggctgctcggTTCCGTAACg > 2:4988417‑M2/41‑50 (MQ=255) gaaacttctcgaggaactggcgggtgcgagggtgctcggTTCCGTAACGt > 2:1735932‑M2/40‑50 (MQ=255) aaacttctcgaggaactggcgggtgcgaggctgcccggTTCCGTAACGtt > 2:957217‑M2/39‑50 (MQ=255) aaacttctcgaggaactggcgggggggaggctgctcggTTCCGTAACGtt > 2:2356473‑M2/39‑50 (MQ=255) acttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTa < 1:1165991‑M2/14‑1 (MQ=255) acttctcgaggaactggcgggggcgaggctgctcggTTCCGTAACGTTTa > 2:3422014‑M2/37‑50 (MQ=255) cttctcgaggaactggcgggggcggggctgctcggTTCCGTAACGTTTAt > 2:481654‑M2/36‑50 (MQ=255) tctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCa > 1:4198672‑M2/34‑50 (MQ=255) tctcgaggaactggcgggagcgaggctgctcggTTCCCCAACGCTtattt > 2:4714175‑M2/34‑48 (MQ=255) tcgaggaactggcgggttcggggctgctcggGTCCGTAACGCTTATCATg > 2:4020820‑M2/32‑50 (MQ=255) tcgaggaactggcgggggcgaggctgctcggTTCCGTAACGTTTATCATg > 2:1915767‑M2/32‑50 (MQ=255) cgaggaactggcgggtgcgaggctgctcggGTCCGTAACGTTTATCATGt > 2:2329171‑M2/31‑50 (MQ=255) cgaggaactggcgggggcgaggcttctcggTTCCGTAACGTTTTTCATGt > 2:3555821‑M2/31‑50 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt < 2:543423‑M2/20‑1 (MQ=255) gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGt < 2:2677362‑M2/20‑1 (MQ=255) gaggaactggcgggggggaggctgctccgTTCCGTAACGTTTATCATGt > 2:4782881‑M2/30‑49 (MQ=255) aggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTa < 2:1337446‑M2/22‑1 (MQ=255) ggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt < 1:2373236‑M2/23‑1 (MQ=255) gaactggcgggggcgaggctgctcggGTCCGTAACGTTTATCATGTTATc > 2:3323437‑M2/27‑50 (MQ=255) aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc > 2:2955670‑M2/26‑50 (MQ=255) aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc > 1:4391803‑M2/26‑50 (MQ=255) actggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt < 1:1699267‑M2/26‑1 (MQ=255) ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATccg < 2:611187/49‑2 (MQ=255) ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCt > 2:232331/1‑49 (MQ=255) ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 1:1372068‑M2/24‑49 (MQ=255) tggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 1:3927244‑M2/23‑48 (MQ=255) tggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCt > 2:337826‑M2/23‑48 (MQ=255) tggcgggtgcgaggctgctcggATCCGTAACGTTTATCATGTTATCCt > 2:1040042‑M2/23‑48 (MQ=255) gcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTaa < 2:1369367‑M2/28‑1 (MQ=255) gTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAgg < 1:3735336/50‑1 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt < 2:4460054‑M2/32‑1 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt < 1:3899273‑M2/32‑1 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt > 2:3510235‑M2/19‑50 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt < 1:4925827‑M2/32‑1 (MQ=255) gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt < 1:1691739‑M2/32‑1 (MQ=255) gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa < 2:228455‑M2/34‑1 (MQ=255) cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc < 2:1054389‑M2/37‑1 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 1:2747181‑M2/13‑49 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 2:3791152‑M2/13‑49 (MQ=255) gaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc > 1:3038053‑M2/13‑49 (MQ=255) cATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCg > 1:2804594/1‑49 (MQ=255) gctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa < 1:4659796‑M2/41‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaa < 1:4761245‑M2/42‑1 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa > 1:1030956‑M2/9‑49 (MQ=255) ctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaa > 1:2410415‑M2/9‑49 (MQ=255) tgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa > 2:4847669‑M2/8‑50 (MQ=255) tcggTTCCGTAACGCTTATCATGTTATCCTAAGGATTATCCGAAAaataa > 2:2649863‑M2/5‑50 (MQ=255) ataATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa > 1:2906063/1‑50 (MQ=255) cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTCTCCGAAAaataa > 2:2852622‑M2/4‑49 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 2:2122041‑M2/3‑50 (MQ=255) ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata > 1:4402284‑M2/3‑50 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc < 2:3865821‑M2/49‑1 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc > 1:651372‑M2/2‑50 (MQ=255) gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc > 1:4099642‑M2/2‑50 (MQ=255) aTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata < 1:2497001/49‑1 (MQ=255) | AATTTTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023630‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |