| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 9 (0.080) | 59 (0.540) | 42/98 | 1.1 | 84.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 12 (0.110) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997062‑1997160 | ttattGCAGCAGACACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCgg > 1:3933002/1‑50 (MQ=255)ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCgg < 2:3558742/50‑1 (MQ=255) tattGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGGGAGGGTGCTTggg > 1:2191212/1‑50 (MQ=37) tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCCGCTCGGt > 1:4868775‑M1/1‑49 (MQ=255) aTTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGtt > 1:4378328‑M1/1‑48 (MQ=255) ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGCGGCTGCTTggggg > 1:1226223/1‑49 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:1120365‑M1/49‑5 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGttccg > 2:3953197‑M1/1‑45 (MQ=255) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgt < 2:1876850‑M1/50‑7 (MQ=255) cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccg < 2:2344993‑M1/49‑6 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGGTCGGttccgta > 2:3277544‑M1/1‑42 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaac < 1:3562114‑M1/50‑10 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccggaac > 2:490030‑M1/1‑41 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaac > 1:2516190‑M1/1‑41 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGGGGGAGGCTGCTCGGttccgtaacg > 2:4988417‑M1/1‑40 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGttccgtaacgt > 2:1735932‑M1/1‑39 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCaaa > 1:4818267/1‑49 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCCCGGttccgtaacgtt > 2:957217‑M1/1‑38 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGGGGGAGGCTGCTCGGttccgtaacgtt > 2:2356473‑M1/1‑38 (MQ=255) aCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttta < 1:1165991‑M1/50‑15 (MQ=255) aCTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgtaacgttta > 2:3422014‑M1/1‑36 (MQ=255) cTTCTCGAGGAACTGGCGGGGGCGGGGCTGCTCGGttccgtaacgtttat > 2:481654‑M1/1‑35 (MQ=255) tctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatca > 1:4198672‑M1/1‑33 (MQ=255) tctcGAGGAACTGGCGGGAGCGAGGCTGCTCGGttccccaacgcttattt > 2:4714175‑M1/1‑33 (MQ=255) tcGAGGAACTGGCGGGTTCGGGGCTGCTCGGgtccgtaacgcttatcatg > 2:4020820‑M1/1‑31 (MQ=255) tcGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGGCGGCAAATAACGCttt > 2:2702014/1‑50 (MQ=255) tcGAGGAACTGGCGGGGGCGAGGCTGCTCGGttccgtaacgtttatcatg > 2:1915767‑M1/1‑31 (MQ=255) cGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtttatcatgt > 2:2329171‑M1/1‑30 (MQ=255) cGAGGAACTGGCGGGGGCGAGGCTTCTCGGttccgtaacgtttttcatgt > 2:3555821‑M1/1‑30 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt < 2:543423‑M1/49‑21 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt < 2:2677362‑M1/49‑21 (MQ=255) gAGGAACTGGCGGGGGGGAGGCTGCTCCGttccgtaacgtttatcatgt > 2:4782881‑M1/1‑29 (MQ=255) aGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtta < 2:1337446‑M1/50‑23 (MQ=255) ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat < 1:2373236‑M1/50‑24 (MQ=255) gAACTGGCGGGGGCGAGGCTGCTCGGgtccgtaacgtttatcatgttatc > 2:3323437‑M1/1‑26 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 2:2955670‑M1/1‑25 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 1:4391803‑M1/1‑25 (MQ=255) aCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct < 1:1699267‑M1/50‑27 (MQ=255) cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:1372068‑M1/1‑23 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:3927244‑M1/1‑22 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 2:337826‑M1/1‑22 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGatccgtaacgtttatcatgttatcct > 2:1040042‑M1/1‑22 (MQ=255) ggCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGccccc > 2:1622451/1‑50 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaa < 2:1369367‑M1/48‑29 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 1:1691739‑M1/50‑33 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 2:4460054‑M1/50‑33 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat > 2:3510235‑M1/1‑18 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 1:3899273‑M1/50‑33 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 1:4925827‑M1/50‑33 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta < 2:228455‑M1/50‑35 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc < 2:1054389‑M1/50‑38 (MQ=255) cGAGGCTGCTCGGGGCCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGAc > 2:50087/1‑50 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:3038053‑M1/1‑12 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 2:3791152‑M1/1‑12 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:2747181‑M1/1‑12 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:4659796‑M1/50‑42 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaa < 1:4761245‑M1/50‑43 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa > 1:2410415‑M1/1‑8 (MQ=255) ctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa > 1:1030956‑M1/1‑8 (MQ=255) ctgctCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATcc > 2:347564/1‑50 (MQ=255) tgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 2:4847669‑M1/1‑7 (MQ=255) tCGGttccgtaacgcttatcatgttatcctaaggattatccgaaaaataa > 2:2649863‑M1/1‑4 (MQ=255) cGGttccgtaacgtttatcatgttatcctaaggattctccgaaaaataa > 2:2852622‑M1/1‑3 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 2:2122041‑M1/1‑2 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata > 1:4402284‑M1/1‑2 (MQ=255) ggggTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGccc < 1:980251/48‑1 (MQ=255) ggggTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGccc < 1:429929/48‑1 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac < 2:3865821‑M1/50‑50 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:651372‑M1/1‑1 (MQ=255) gttccgtaacgtttatcatgttatcctaaggattatccgaaaaataatac > 1:4099642‑M1/1‑1 (MQ=255) | TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCTG > NC_000913/1997062‑1997160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |