| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 8 (0.070) | 132 (1.230) | 74/96 | 0.0 | 93.3% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 11 (0.100) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 138 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:864374/50‑1CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 2:4605074/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:4575814/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 2:197411/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 2:3108326/1‑50 GATGGCAATCCTGATGGTCACTGTCCCAACGCTTACTATTGGTTATATTT > 1:1199135/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 2:1353064/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 2:1062543/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 2:238598/1‑49 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 2:2506479/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 2:599708/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:2747678/48‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA > 1:2388836/1‑50 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 2:1118437/50‑1 GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 2:3258289/1‑50 GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:1880242/1‑50 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:1781231/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 2:397862/1‑49 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 2:2247403/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 2:5051051/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 2:3139637/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 2:3304599/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 2:5355101/1‑50 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT > 2:2406831/1‑50 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 2:499646/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:244875/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:3221143/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 2:4903070/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT > 2:711835/1‑49 CCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:5253809/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 2:4024926/50‑1 GATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG > 1:2681332/1‑50 GATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG > 1:42598/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC < 1:4551154/50‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 2:2977701/1‑50 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 2:5039927/50‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 2:176413/50‑1 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:2164150/1‑50 GTCATTGTCGCAACGCTTGCTATTGGTTATATTTCACCACTCATTGCCA < 2:3724370/49‑1 GTCATTGTCCCAACGCTTCCTATTGGTTATATTTCACCACTCATTGCCA > 2:5235009/1‑49 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCGCTCATTGCCAC < 2:193029/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:2011785/1‑49 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 2:3866705/1‑49 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:1609438/50‑1 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 2:5374443/1‑50 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:2840634/1‑50 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:436451/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 2:3841011/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 2:4933406/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:3006737/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:112134/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 2:1290671/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:3602765/49‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:1238836/50‑1 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 1:3595391/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 2:1127844/1‑50 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC < 1:196849/49‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 2:459334/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:1795313/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT > 1:2030875/1‑50 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:1790927/1‑50 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 2:5252554/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:3496347/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:3448595/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 2:4545344/1‑50 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:1042745/50‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 2:1074881/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 2:3775566/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:679483/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:949070/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:4812712/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:313632/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 2:1749896/1‑48 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 2:4700443/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:2231110/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:3249134/1‑50 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 2:380521/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:5333292/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:2295907/48‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 2:3995900/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:950194/1‑48 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:3900663/50‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 2:4467813/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 2:1967775/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 2:4581740/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATGCCTTGTGTATAGCCA < 2:1164458/49‑1 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:2211384/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:4318335/48‑1 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:3047687/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 2:2789503/50‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 2:1191558/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:4216443/50‑1 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:4162932/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 2:5198198/1‑49 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:1017864/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:966219/49‑1 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 2:2770437/1‑50 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:1066265/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1632262/49‑1 TTTCACCACTCATTGCCACATTCCGTGTGTATAGCCAGCCATTTTTTACG < 1:58392/50‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |