| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 8 (0.070) | 132 (1.230) | 74/96 | 0.0 | 93.3% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 11 (0.100) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 146 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:1282019‑M1/1‑50 (MQ=255)cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:864374‑M1/50‑1 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 2:197411‑M1/1‑49 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 2:3108326‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCACTGTCCCAACGCTTACTATTGGTTATATtt > 1:1199135‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 2:1062543‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 2:238598‑M1/1‑47 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 2:2506479‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 2:599708‑M1/48‑2 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:2747678‑M1/48‑2 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATc < 2:1646129/48‑1 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 2:1118437‑M1/50‑5 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca > 1:2388836‑M1/1‑46 (MQ=255) ggCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 2:3258289‑M1/1‑45 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:1781231‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:1641149‑M1/50‑7 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 2:2247403‑M1/1‑43 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 2:5051051‑M1/50‑8 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 2:5355101‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGaac > 2:3032849/1‑49 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 2:1432735‑M1/50‑10 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 2:499646‑M1/50‑10 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 2:524101‑M1/1‑41 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:3221143‑M1/50‑11 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:244875‑M1/50‑11 (MQ=255) ccTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca > 1:5253809‑M1/1‑39 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 2:4024926‑M1/50‑13 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:3548146‑M1/1‑37 (MQ=255) gATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg > 2:3251873‑M1/1‑36 (MQ=255) gATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg > 1:2681332‑M1/1‑36 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:4551154‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:2237147‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:3417812‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 2:291586‑M1/48‑14 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcc < 2:176413‑M1/50‑17 (MQ=255) gTCATTGTCGCAACGCTTGCTATTGGTTATATttcaccactcattgcca < 2:3724370‑M1/49‑18 (MQ=255) gTCATTGTCCCAACGCTTCCTATTGGTTATATttcaccactcattgcca > 2:5235009‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:6357‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 2:2011785‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 2:3866705‑M1/1‑32 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:2073451‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:1609438‑M1/50‑20 (MQ=255) tCATTGTCCCAAAGCTTACTATTGGTTATATttcaccactcattgccaca > 2:3974584‑M1/1‑31 (MQ=255) cATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat > 1:2840634‑M1/1‑30 (MQ=255) cATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat > 2:1188236‑M1/1‑30 (MQ=255) cATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat > 2:5374443‑M1/1‑30 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 2:1290671‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 2:2417868‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:4532482‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 2:4933406‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:112134‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 2:461409‑M1/49‑21 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:3602765‑M1/49‑21 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct > 2:1127844‑M1/1‑26 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:196849‑M1/49‑24 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 2:4589822‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt > 1:1798692‑M1/1‑25 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:2959638‑M1/49‑25 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt < 2:459334‑M1/50‑28 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:2030875‑M1/1‑23 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:1795313‑M1/1‑23 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgt < 1:3496347‑M1/50‑30 (MQ=255) aaCGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCt > 2:2068466/1‑50 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 2:4545344‑M1/1‑20 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:1042745‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 2:1074881‑M1/50‑31 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3083339‑M1/1‑19 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:943154‑M1/1‑19 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:4812712‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:5161934‑M1/1‑18 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:2231110‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 2:4700443‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:3249134‑M1/1‑17 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:4316662‑M1/1‑15 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagcc < 2:380521‑M1/49‑36 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:950194‑M1/1‑14 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 2:3995900‑M1/1‑14 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag < 1:3900663‑M1/50‑38 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag > 2:4467813‑M1/1‑13 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagcca < 2:1967775‑M1/49‑37 (MQ=255) aTTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGaaa > 2:886866/1‑49 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagc < 1:4318335‑M1/48‑39 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:3047687‑M1/1‑8 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccat < 2:508262‑M1/49‑42 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt < 2:2789503‑M1/50‑44 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 2:1858908‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 2:1191558‑M1/49‑43 (MQ=255) ttATATttctccactcattgccacagtccttgtgtatagccagccatttt < 2:2360314‑M1/50‑45 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:4216443‑M1/50‑45 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 2:3648834‑M1/50‑45 (MQ=255) ttATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAagag > 2:3831773/1‑49 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt > 1:4162932‑M1/1‑4 (MQ=255) tatttcacctctcattgccacattccttgtgtatagccagccaattttt < 2:4980295‑M1/49‑47 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:1017864‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 2:3826416‑M1/49‑47 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:966219‑M1/49‑47 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:1066265‑M1/1‑2 (MQ=255) atCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGaaaa > 2:943747/1‑49 (MQ=255) tttcaccactcattgccacattccgtgtgtatagccagccattttttacg < 1:58392‑M1/50‑50 (MQ=255) tCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGaaaaaa < 2:661079/50‑1 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |