| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 8 (0.070) | 132 (1.230) | 74/96 | 0.0 | 93.3% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 11 (0.100) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 146 total aligned reads displayed.
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 2:1983438‑M2/50‑50 (MQ=255) gatggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 2:3108326‑M2/49‑50 (MQ=255) gatggcaatcctgatggtcactgtcccaacgcttactattggttatattt > 1:1199135‑M2/49‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 2:238598‑M2/48‑49 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatattt < 2:2506479‑M2/2‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatt < 1:2747678‑M2/1‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatt < 2:599708‑M2/1‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatTTc < 2:1353064‑M2/3‑1 (MQ=255) tggcaatcctgatggtcattgtcccaacgcttactattggttatatTTca < 2:1118437‑M2/4‑1 (MQ=255) cgcCAAACCCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTc < 2:4615454/49‑1 (MQ=255) cgcAAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTc < 1:1720993/49‑1 (MQ=255) ggcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac > 2:3258289‑M2/46‑50 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcacc < 1:1781231‑M2/6‑1 (MQ=255) caatcctgatggtcattgtcccaacgcttactattggttatatTTcacca < 2:5051051‑M2/7‑1 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 2:3139637‑M2/43‑50 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 2:3304599‑M2/43‑50 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 2:5355101‑M2/43‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 2:524101‑M2/42‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 2:499646‑M2/9‑1 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 2:711835‑M2/41‑49 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACTc < 1:244875‑M2/10‑1 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACTc < 2:4903070‑M2/10‑1 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACTc < 1:3221143‑M2/10‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt < 2:4024926‑M2/12‑1 (MQ=255) tgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt > 1:3548146‑M2/38‑50 (MQ=255) gatggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg > 1:42598‑M2/37‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 2:291586‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTg < 1:3417812‑M2/14‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc < 1:4551154‑M2/15‑1 (MQ=255) tggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGcc < 2:176413‑M2/16‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 2:2164150‑M2/34‑50 (MQ=255) gtcattgtcgcaacgcttgctattggttatatTTCACCACTCATTGCca < 2:3724370‑M2/17‑1 (MQ=255) gtcattgtcccaacgcttcctattggttatatTTCACCACTCATTGCca > 2:5235009‑M2/33‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCGCTCATTGCcac < 2:193029‑M2/18‑1 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcac < 1:6357‑M2/18‑1 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 2:3866705‑M2/33‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 2:2011785‑M2/33‑49 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca < 2:1047496‑M2/19‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca > 2:1116819‑M2/32‑50 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca < 1:1609438‑M2/19‑1 (MQ=255) tcattgtcccaaagcttactattggttatatTTCACCACTCATTGCcaca > 2:3974584‑M2/32‑50 (MQ=255) cattgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt > 2:5374443‑M2/31‑50 (MQ=255) cattgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt > 2:1188236‑M2/31‑50 (MQ=255) cattgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt > 1:2840634‑M2/31‑50 (MQ=255) cattgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt > 1:436451‑M2/31‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 1:3006737‑M2/21‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 2:2417868‑M2/21‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:4532482‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt < 1:112134‑M2/21‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 2:1290671‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt < 1:3602765‑M2/20‑1 (MQ=255) tAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCt > 1:2351946/1‑50 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:196849‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 1:3595391‑M2/27‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt > 1:1798692‑M2/26‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt < 2:4589822‑M2/25‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 2:459334‑M2/27‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:1795313‑M2/24‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:2030875‑M2/24‑50 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 2:4545344‑M2/21‑50 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 2:1074881‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:1042745‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:3448595‑M2/30‑1 (MQ=255) gCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGtat < 1:4092802/50‑1 (MQ=255) gCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGtat < 2:3759953/50‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 2:3775566‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:679483‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:949070‑M2/20‑49 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:943154‑M2/20‑49 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:313632‑M2/32‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:4812712‑M2/32‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 2:1749896‑M2/19‑48 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:5161934‑M2/19‑48 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:2231110‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 2:4700443‑M2/18‑50 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:3249134‑M2/18‑50 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:4316662‑M2/16‑49 (MQ=255) gCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:5382866/50‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:5333292‑M2/35‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 2:3995900‑M2/15‑48 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc < 1:2295907‑M2/34‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag > 2:4467813‑M2/14‑50 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag < 1:3900663‑M2/37‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagcca < 2:1967775‑M2/36‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATGCCTTGTGTATagcca < 2:1164458‑M2/36‑1 (MQ=255) tttCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:1997628/1‑50 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:2211384‑M2/13‑50 (MQ=255) attggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:2679065‑M2/12‑49 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt > 1:3047687‑M2/9‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt < 2:508262‑M2/41‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt < 2:2789503‑M2/43‑1 (MQ=255) ttatatTTCTCCACTCATTGCCACAGTCCTTGTGTATAGCCAGCCAtttt < 2:2360314‑M2/44‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:4162932‑M2/5‑49 (MQ=255) tttttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 2:3826755/48‑1 (MQ=255) tatTTCACCTCTCATTGCCACATTCCTTGTGTATAGCCAGCCAattttt < 2:4980295‑M2/46‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 1:966219‑M2/46‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 2:3826416‑M2/46‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa > 1:1017864‑M2/4‑50 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:1066265‑M2/3‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:1632262‑M2/48‑1 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |