| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 13 (0.120) | 133 (1.240) | 64/96 | 0.0 | 91.2% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 13 (0.120) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 139 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:4536377/1‑50AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:1047864/50‑1AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:2355421/1‑50AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:14458/50‑1AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:3395196/1‑50 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 2:4196361/50‑1 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:1770024/50‑1 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:2094557/1‑50 CGAAAAGCTCTATTGTTTACGTCGGG‑CTAAACGCAGGGAGACTCCCCACC > 2:3423376/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:2760853/50‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:4072192/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:1496722/50‑1 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT < 1:897800/50‑1 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:478730/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:2075993/1‑50 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT < 2:4187221/50‑1 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:679807/50‑1 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 2:4598057/1‑49 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA < 1:2899495/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:1243266/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA > 1:4663328/1‑49 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 2:440516/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 2:4729923/50‑1 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:4880447/1‑49 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 2:100901/1‑48 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:1734357/1‑48 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:2104374/1‑48 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG < 2:2157080/49‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 2:581703/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 2:2134139/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAAC < 1:2830699/47‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 2:5032271/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:4684008/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:2624056/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCTCCTTTGAAAACAGGAT < 2:4354265/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:2901833/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:4264143/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 2:1376973/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:4032939/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 2:802647/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:1670943/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:3159643/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 2:150967/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 2:3798900/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:89477/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:1639938/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 2:287554/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:1394479/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:2424879/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 2:507646/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 2:5164411/1‑49 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 2:5071393/1‑49 TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA < 1:690882/50‑1 TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA > 1:360646/1‑50 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:4580486/48‑1 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG < 1:102669/47‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 2:3092912/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA > 1:4071534/2‑49 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 2:1232347/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 2:456246/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA > 2:5355220/1‑50 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 2:1776026/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA > 1:516433/1‑50 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:5371427/50‑1 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGACGTAGCGATGAAAC > 2:2343530/1‑50 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT > 1:1399060/1‑50 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:4206609/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:1508476/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:3555260/48‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 2:4838044/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:4810001/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:2432259/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 1:3461351/1‑49 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 2:3051623/1‑49 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:762093/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:3022336/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:3469978/1‑50 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:773740/1‑50 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 2:404763/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:1019157/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:482641/50‑1 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 2:2869857/1‑50 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 2:2133194/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 2:3877395/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 2:1679820/1‑49 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:4874182/1‑50 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:2871935/1‑50 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 2:1883989/1‑50 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 2:650569/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC > 1:744625/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC > 2:552838/1‑50 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 2:3059527/1‑49 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:534607/1‑49 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 2:192482/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 2:1738251/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 2:413178/48‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 2:2084246/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:3862053/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > 2:5139319/1‑50 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:974736/50‑1 AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |