| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 13 (0.120) | 133 (1.240) | 64/96 | 0.0 | 91.2% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 13 (0.120) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 152 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCA > NC_000913/2756109‑2756207 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:4536377‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 2:2355421‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:14458‑M1/50‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 2:4196361‑M1/50‑2 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:1770024‑M1/50‑2 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:2094557‑M1/1‑48 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 2:1561178‑M1/50‑3 (MQ=255) cGAAAAGCTCTATTGTTTACGTCGGG‑CTAAACGCAGGGAGACTCCCCAcc > 2:3423376‑M1/1‑48 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:4072192‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:2760853‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 2:4635540‑M1/50‑4 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:478730‑M1/1‑46 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:2075993‑M1/1‑46 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:5072478‑M1/1‑45 (MQ=255) aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCaa < 1:4871058/50‑1 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:1243266‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga > 1:4736270‑M1/1‑42 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga > 1:4663328‑M1/1‑42 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 2:4729923‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 2:440516‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 2:3101607‑M1/1‑41 (MQ=255) tctATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa > 2:4939522/1‑49 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 2:3478096‑M1/1‑40 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:1734357‑M1/1‑38 (MQ=255) ttGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaa < 2:842642/47‑1 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 2:2134139‑M1/48‑13 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCTcctttgaaaacaggat < 2:4354265‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:4264143‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:4032939‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2901833‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:1670943‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3159643‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 2:150967‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 2:3798900‑M1/49‑19 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:2495381‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:89477‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:287554‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:918749‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:1639938‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:1394479‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 2:507646‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:1507130‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 2:5071393‑M1/1‑28 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 2:5164411‑M1/1‑28 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga > 1:360646‑M1/1‑27 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga < 1:690882‑M1/50‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:1415559‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:4580486‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:102669‑M1/47‑26 (MQ=255) gCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACt < 1:2736790/50‑1 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 2:4952707‑M1/49‑28 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 2:456246‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:5371427‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa > 1:516433‑M1/1‑22 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa > 2:5355220‑M1/1‑22 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 2:1232347‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 2:1776026‑M1/50‑29 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:4080205‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggacgtagcgatgaaac > 2:2343530‑M1/1‑21 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 2:2142876‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:4206609‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:1508476‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 2:624008‑M1/48‑30 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:2849646‑M1/48‑30 (MQ=255) aaCGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATAc < 1:2286780/50‑1 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:2432259‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:4810001‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt > 1:3461351‑M1/1‑18 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt > 2:3051623‑M1/1‑18 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:3022336‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:762093‑M1/50‑34 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:3469978‑M1/1‑16 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 2:4085191‑M1/1‑16 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:609577‑M1/50‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:482641‑M1/50‑36 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:1019157‑M1/50‑36 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 2:4256483‑M1/1‑15 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:3589273‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 2:2869857‑M1/1‑14 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:3897688‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 2:2090367‑M1/1‑11 (MQ=255) gagaCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATc > 1:1121487/1‑49 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 2:3877395‑M1/50‑41 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 2:1253122‑M1/50‑41 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:783020‑M1/1‑10 (MQ=255) agaCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCa > 1:1193033/1‑49 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:4874182‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 2:650569‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:2402054‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 2:1883989‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:2871935‑M1/1‑8 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac > 2:552838‑M1/1‑7 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac > 1:744625‑M1/1‑7 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 2:3059527‑M1/1‑5 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 2:1738251‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 2:192482‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 2:413178‑M1/48‑45 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 2:2084246‑M1/50‑48 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt > 2:5139319‑M1/1‑2 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:974736‑M1/50‑49 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCA > NC_000913/2756109‑2756207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |