| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 13 (0.120) | 133 (1.240) | 64/96 | 0.0 | 91.2% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 13 (0.120) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 155 total aligned reads displayed.
GCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791202‑2791300 | acgaaaagctctattgtttacgttgggctaaacgcagggagactccccac < 2:4196361‑M2/1‑1 (MQ=255)acgaaaagctctattgtttacgttgggctaaacgcagggagactccccac < 1:1770024‑M2/1‑1 (MQ=255) cgaaaagctctattgtttacgtcgggctaaacgcagggagactccccacc > 2:3423376‑M2/49‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 1:4072192‑M2/48‑50 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 1:1496722‑M2/3‑1 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 2:4635540‑M2/3‑1 (MQ=255) aaaagctctattgtttacgttgggctaaacgcagggagactccccaCCtt < 1:897800‑M2/4‑1 (MQ=255) aaaagctctattgtttacgttgggctaaacgcagggagactccccaCCtt > 1:2075993‑M2/47‑50 (MQ=255) ggCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGa < 2:3411569/50‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa < 1:2899495‑M2/7‑1 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa < 1:1243266‑M2/8‑1 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa > 1:4736270‑M2/43‑49 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa > 1:4663328‑M2/43‑49 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaa < 2:440516‑M2/9‑1 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaa < 2:4729923‑M2/9‑1 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 2:3101607‑M2/42‑49 (MQ=255) ctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:4459740‑M2/42‑49 (MQ=255) aCGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGaaaa > 1:2171503/1‑50 (MQ=255) ctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 1:4880447‑M2/40‑49 (MQ=255) ctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 1:1236268‑M2/40‑49 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 2:100901‑M2/39‑48 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 1:2104374‑M2/39‑48 (MQ=255) tattgtttacgttgggctaaacgcagggagactccccaCCTTTGaaaa > 1:1734357‑M2/39‑48 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAAc < 1:2830699‑M2/11‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACa < 2:2134139‑M2/12‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg > 2:581703‑M2/37‑49 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 2:2157080‑M2/13‑1 (MQ=255) gtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt > 1:2624056‑M2/35‑50 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGgac < 2:2876345‑M2/16‑2 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 2:150967‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:3159643‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg > 1:4264143‑M2/34‑50 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg > 1:2901833‑M2/34‑50 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg > 1:1670943‑M2/34‑50 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGt < 2:3798900‑M2/18‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAg < 1:1507130‑M2/20‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 2:507646‑M2/21‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 1:2424879‑M2/30‑50 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 1:1639938‑M2/30‑50 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 1:918749‑M2/21‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 1:1394479‑M2/30‑50 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 2:5071393‑M2/29‑49 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 2:5164411‑M2/29‑49 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGa > 1:360646‑M2/28‑50 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGa < 1:690882‑M2/23‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg < 1:102669‑M2/25‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 2:4952707‑M2/27‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 2:3092912‑M2/27‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa > 1:4071534‑M2/24‑49 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 1:5371427‑M2/28‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 2:1776026‑M2/28‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 2:1232347‑M2/28‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa > 2:5355220‑M2/23‑50 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa < 2:456246‑M2/28‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaaa > 1:516433‑M2/23‑50 (MQ=255) taaacgcagggagactccccaCCTTTGAAAACAGGACGTAGCGATGAAAc > 2:2343530‑M2/22‑50 (MQ=255) acGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACt < 1:4212286/50‑1 (MQ=255) aaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt > 1:1399060‑M2/21‑50 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 1:2849646‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 2:624008‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:4206609‑M2/31‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt > 1:3461351‑M2/19‑49 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt > 2:3051623‑M2/19‑49 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 1:2432259‑M2/32‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 1:4810001‑M2/32‑1 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTaa < 1:3022336‑M2/33‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 2:4085191‑M2/17‑50 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 1:3469978‑M2/17‑50 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc < 1:609577‑M2/34‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 1:773740‑M2/17‑50 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc > 2:4256483‑M2/16‑49 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 1:1019157‑M2/35‑1 (MQ=255) cagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 1:482641‑M2/35‑1 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa > 2:2869857‑M2/15‑50 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa > 1:3589273‑M2/15‑50 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa < 2:1796262‑M2/36‑1 (MQ=255) gggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAc < 2:2133194‑M2/37‑1 (MQ=255) tttAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa > 1:707696/1‑48 (MQ=255) gagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg > 1:3897688‑M2/12‑50 (MQ=255) tAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 2:547964/49‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg > 1:783020‑M2/11‑49 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg > 2:1679820‑M2/11‑49 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 2:1253122‑M2/40‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa > 1:4874182‑M2/9‑50 (MQ=255) aTCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa > 2:3751721/1‑50 (MQ=255) ctccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAc > 1:744625‑M2/8‑50 (MQ=255) ccccaCCTTTGAAAACAGGATGTAGCGCTGAAACTTAACGACAGTAACt > 2:4520134‑M2/6‑49 (MQ=255) aaTAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACtt < 1:462992/50‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACtt < 2:192482‑M2/45‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt < 2:413178‑M2/44‑1 (MQ=255) tAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt > 1:1825267/1‑50 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 2:2084246‑M2/47‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt > 2:5139319‑M2/3‑50 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:974736‑M2/48‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 2:4451694/50‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 2:3920732/50‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 2:1611899/50‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 1:2002921/50‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 2:761152/50‑1 (MQ=255) ccTTTGAAAACAGGATATAGCGATGAAACTTAACGACAGTAACTTATTcc < 1:5081817/50‑1 (MQ=255) | GCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791202‑2791300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |