| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 28 (0.260) | 101 (0.980) | 59/92 | 0.0 | 81.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 21 (0.200) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 115 total aligned reads displayed.
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 2:1453231/1‑50 AACGGCGTAATGACCGTTCAGTTTGCGTTCGTCGTTACCAAACAGCAACG < 2:2410957/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:2805348/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:3175616/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:2921352/49‑1 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:767949/50‑1 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 2:208198/50‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 2:161906/1‑50 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 2:2728858/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 2:1020115/1‑48 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA < 1:568768/50‑1 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA < 1:4707987/50‑1 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA < 1:2813452/50‑1 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA < 1:1634249/50‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 2:2919045/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 2:407239/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 2:2900319/50‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 2:4347297/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 2:2774877/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 2:2419007/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:2700207/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:273331/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:1899027/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 2:2749652/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:3636528/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:528181/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:4568945/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 2:3178586/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 2:554601/49‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:4799724/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:1049887/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 2:4323678/1‑50 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCG < 2:705989/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:4968967/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:4546967/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 2:1340200/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2811321/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1615678/1‑48 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 1:4277352/50‑1 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 1:4040752/50‑1 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:612478/1‑50 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA < 2:4670612/49‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 2:4412596/49‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 2:157573/50‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 2:1355527/50‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 2:2674870/50‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 2:770484/1‑49 TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 2:3431348/1‑50 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:4469042/1‑49 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGAC < 2:4319939/49‑1 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGAC < 1:17324/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 2:1349818/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA < 2:2669477/49‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC < 1:648534/50‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 2:3537334/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 2:3392240/1‑50 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT < 1:3327912/50‑1 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT > 1:192306/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 2:4611947/49‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1236253/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:4934111/1‑49 GTCGTTACCAAACAGCTCCGATCATCCGGCGGCGAGAGGCGACATCTCCA < 1:3223616/50‑1 GTCGTTACCAAACAGCACCGGTCATCCGGCGGCGAGAGGCGACATCACC < 2:3917594/49‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:2340638/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:1370968/50‑1 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:2958522/50‑1 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 2:2296878/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGC < 2:590876/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG < 1:5233084/49‑1 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 2:4003104/1‑48 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:2325520/1‑50 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:2602573/1‑50 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 2:4468964/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG < 2:5208835/49‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:2398195/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 2:1565839/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 2:3757338/50‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 2:1690467/49‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:1048052/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 2:1686218/1‑50 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:4338912/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCGCGCAGTGCG < 2:4275091/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:1074897/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 2:2041700/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 2:178109/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:2275252/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:4538708/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 2:4204717/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 2:1809479/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 2:5385330/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:3063429/50‑1 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:2649054/1‑50 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:1046458/1‑50 cCCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 2:3564985/2‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 2:2887389/50‑1 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 2:3824525/1‑49 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA < 1:1483939/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:2232318/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:1070286/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 1:1168361/50‑1 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |