| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 28 (0.260) | 101 (0.980) | 59/92 | 0.0 | 81.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 21 (0.200) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 137 total aligned reads displayed.
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 2:208198‑M1/50‑1 (MQ=255)aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:767949‑M1/50‑1 (MQ=255) cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 2:161906‑M1/1‑49 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 2:2728858‑M1/1‑48 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 2:1020115‑M1/1‑48 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca < 1:568768‑M1/50‑4 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca < 1:4707987‑M1/50‑4 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 2:407239‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 2:2919045‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:4143447‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc > 2:4347297‑M1/1‑44 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc > 2:2774877‑M1/1‑44 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagcca < 2:79750/50‑1 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagcca < 2:1770715/50‑1 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 2:2419007‑M1/1‑43 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:2700207‑M1/1‑43 (MQ=255) aaTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:273331‑M1/1‑43 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:4568945‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg < 2:554601‑M1/49‑8 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccagc > 2:499832/1‑50 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:1049887‑M1/1‑41 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 2:3601176‑M1/1‑40 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:4323678‑M1/1‑38 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2811321‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:4968967‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 2:1340200‑M1/1‑37 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAccc > 1:3615388/1‑50 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:1615678‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:263490‑M1/1‑36 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCt > 2:2870446/1‑50 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:4040752‑M1/50‑16 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:4277352‑M1/50‑16 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:612478‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:2216943‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:4622863‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgaga < 2:4670612‑M1/49‑17 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag < 2:4412596‑M1/49‑18 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGttt > 2:1751813/1‑50 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 2:1355527‑M1/50‑20 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 2:2674870‑M1/50‑20 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 1:890626/1‑50 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 1:4281296/1‑50 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 2:770484‑M1/1‑30 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 2:3431348‑M1/1‑29 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:4469042‑M1/1‑28 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgac < 2:4319939‑M1/49‑23 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgac < 1:17324‑M1/49‑23 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtag > 2:4832690/1‑49 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca < 2:2669477‑M1/49‑24 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta < 1:3457935/50‑1 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagt > 1:1748341/1‑49 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc < 1:648534‑M1/50‑26 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 2:3392240‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 2:3537334‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:3286627/1‑49 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:192306‑M1/1‑24 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:4934111‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1236253‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCTCCGAtcatccggcggcgagaggcgacatctcca < 1:3223616‑M1/50‑30 (MQ=255) gtcgtTACCAAACAGCACCGGtcatccggcggcgagaggcgacatcacc < 2:3917594‑M1/49‑29 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:2340638‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 2:1436442‑M1/1‑21 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:1370968‑M1/50‑31 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:2958522‑M1/50‑31 (MQ=255) cgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAAc > 2:2051000/1‑50 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgc < 2:590876‑M1/50‑33 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg < 1:5233084‑M1/49‑32 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 2:4003104‑M1/1‑17 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:2325520‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 2:4468964‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:2602573‑M1/1‑16 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 2:1565839‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 1:2941029‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 2:3757338‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 1:2398195‑M1/50‑37 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:1048052‑M1/49‑36 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 2:1686218‑M1/1‑13 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:4338912‑M1/50‑38 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 2:2914383‑M1/50‑38 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccgcgcagtgcg < 2:4275091‑M1/50‑39 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 2:2041700‑M1/1‑12 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 2:178109‑M1/1‑12 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:1074897‑M1/1‑12 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:4538708‑M1/1‑11 (MQ=255) aCAGCACCGACAGCCAGCCAACCTGTTTGTAGTAAAGAAACTCCACCACt < 2:494290/50‑1 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 2:4204717‑M1/1‑9 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 2:5385330‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:3063429‑M1/50‑43 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 2:5100432‑M1/50‑43 (MQ=255) aGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTc < 2:4435121/50‑1 (MQ=255) gCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTcc < 1:3151012/50‑1 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:1046458‑M1/1‑6 (MQ=255) cACCGACAGCCAGCCGCCCTGTTTGTAGTAAAGAAACGCCACCACTTCCg < 1:5301251/50‑1 (MQ=39) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 2:2887389‑M1/50‑46 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgca < 1:1483939‑M1/50‑48 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 1:2232318‑M1/1‑3 (MQ=255) cGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCgg > 2:3583087/1‑48 (MQ=255) gACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAg > 2:2441922/1‑50 (MQ=255) gACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAg < 1:371614/50‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaa < 1:1168361‑M1/50‑50 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |