| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 28 (0.260) | 101 (0.980) | 59/92 | 0.0 | 81.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 21 (0.200) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
Only 100 of 129 total aligned reads displayed.
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 2:161906‑M2/50‑50 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca < 1:2813452‑M2/3‑1 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca < 1:4707987‑M2/3‑1 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatca < 2:4256629/49‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 2:2919045‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4143447‑M2/46‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc > 2:2774877‑M2/45‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc > 2:4347297‑M2/45‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 2:2900319‑M2/6‑1 (MQ=255) aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATcc < 2:4573764/50‑1 (MQ=255) aTAACGGCGGGCAAATTTTTCCACCAGACGCCAGTTACTCTCGATCATcc > 2:3940386/1‑50 (MQ=38) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:3636528‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:273331‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:1899027‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 2:2749652‑M2/44‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg < 1:528181‑M2/8‑1 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:4799724‑M2/42‑50 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:1049887‑M2/42‑50 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 2:3601176‑M2/41‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:4323678‑M2/39‑50 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:4968967‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:4546967‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:2811321‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGgcggcg < 2:705989‑M2/13‑1 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1615678‑M2/37‑48 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:263490‑M2/37‑48 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1302490‑M2/36‑47 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgag < 1:4040752‑M2/15‑1 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgag < 1:4277352‑M2/15‑1 (MQ=255) ggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 2:2976989/1‑47 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgaga < 2:4670612‑M2/16‑1 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:4622863‑M2/34‑50 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:612478‑M2/34‑50 (MQ=255) cAATTTTTACCACCAGACGCAAGTTACTCGCGATCATCCGGCGGCGagag < 2:212481/50‑1 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag < 2:4412596‑M2/17‑1 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 2:2674870‑M2/19‑1 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 2:2582184‑M2/32‑50 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 2:157573‑M2/19‑1 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 2:1355527‑M2/19‑1 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 2:770484‑M2/31‑49 (MQ=255) ttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 2:3431348‑M2/30‑50 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:4469042‑M2/29‑49 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGAc < 1:17324‑M2/22‑1 (MQ=255) tACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAt > 2:4517599/1‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa < 2:2669477‑M2/23‑1 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 2:1349818‑M2/27‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 2:3392240‑M2/26‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc < 1:648534‑M2/25‑1 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 2:3537334‑M2/26‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:192306‑M2/25‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:4934111‑M2/23‑49 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:1236253‑M2/23‑49 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc < 2:4611947‑M2/27‑1 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTcc < 1:3154105/50‑1 (MQ=255) gtcgttaccaaacagctccgaTCATCCGGCGGCGAGAGGCGACATCTCCa < 1:3223616‑M2/29‑1 (MQ=255) gtcgttaccaaacagcaccggTCATCCGGCGGCGAGAGGCGACATCAcc < 2:3917594‑M2/28‑1 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 2:1436442‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:2340638‑M2/22‑50 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc < 1:1370968‑M2/30‑1 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc < 2:2296878‑M2/30‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:5233084‑M2/31‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGc < 2:590876‑M2/32‑1 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:4003104‑M2/18‑48 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:2602573‑M2/17‑50 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:2325520‑M2/17‑50 (MQ=255) cGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 2:3594099/50‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 2:5208835‑M2/34‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:1048052‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 2:1690467‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:2941029‑M2/36‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 2:3757338‑M2/36‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 2:1565839‑M2/36‑1 (MQ=255) cAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 2:2267610/50‑1 (MQ=255) cAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:4047259/50‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 2:2914383‑M2/37‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCGCGCAGTgcg < 2:4275091‑M2/38‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 2:178109‑M2/13‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:1074897‑M2/13‑50 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:4186230/1‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:2275252‑M2/12‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:4538708‑M2/12‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 2:4204717‑M2/10‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 2:5385330‑M2/42‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 2:5100432‑M2/42‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:3063429‑M2/42‑1 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:2649054‑M2/9‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 2:1809479‑M2/42‑1 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa < 2:2812589/49‑1 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:582037‑M2/43‑1 (MQ=255) tctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 2:2074932/1‑50 (MQ=255) tctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 2:1351112/1‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:1046458‑M2/7‑50 (MQ=255) tcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc < 1:779573/48‑1 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:2232318‑M2/4‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa < 1:1483939‑M2/47‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 2:4303068‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:1070286‑M2/3‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaa < 1:1168361‑M2/49‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:3864451/50‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 2:3714359/50‑1 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |