| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 13 (0.120) | 81 (0.770) +GA |
49/94 | 0.4 | 88.9% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 8 (0.070) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || AGGCTTCTCAGCAGCGCTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:4794775/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:353576/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:1908008/50‑1AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:4292293/1‑49 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:4666068/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 2:711888/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 2:3556254/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 2:3752720/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2214805/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:3256866/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:52832/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:1907591/50‑1 GCTGCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 2:3562703/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:1768699/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 2:2531360/50‑1 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:1968009/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:1480781/1‑50 TCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:2858484/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 2:3182744/49‑1 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:4080652/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 2:4451408/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 2:4885186/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:3203849/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:3141293/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:1618825/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 2:4336408/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 2:2476757/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:2329116/48‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 2:73380/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:344221/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 2:3555838/50‑1 CAGCACTGACATCAATTTGTTTCACCCGCAGCGCATAGAACGCCATTTTG < 1:4046418/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:3831300/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:1204994/1‑49 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 2:5228135/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:128065/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:3911466/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:4415792/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:5046851/1‑49 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:4783020/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:1251069/1‑49 ACATCAATATGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 2:3767740/49‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:2505464/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:5065138/1‑50 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:3125905/1‑50 TCAATTTGTGTCGCCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:3787415/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:1110994/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 2:2426572/49‑1 AATTTGTGGCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 2:5391383/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:3174841/50‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 2:3545732/49‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 2:1539563/49‑1 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:583633/1‑50 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 1:1496169/49‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT < 1:3245421/50‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 2:5109850/1‑50 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA < 1:728229/49‑1 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:3414757/1‑49 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 2:3689595/1‑49 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATT < 2:5340469/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:3477066/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:1190914/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:1382572/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 2:4189606/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:163721/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:2187176/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:1333141/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:1063119/1‑49 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:1915147/1‑49 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 2:3112776/1‑49 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:2844186/1‑49 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:142477/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 2:4769976/1‑50 AGCGCATAGAGCGCCATTTTGAATTTACGAGCGGACGCATTATCAGTGAC < 2:4572349/50‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:900600/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:4065990/1‑50 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:144550/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 2:1173998/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:4860823/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2483441/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 2:579115/1‑49 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 2:4336150/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:208596/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:1515084/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 2:611202/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 2:1099382/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:4743407/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:5072803/1‑49 || AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110632‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |