| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 13 (0.120) | 81 (0.770) +GA |
49/94 | 0.4 | 88.9% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 8 (0.070) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 2:711888‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:4666068‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 2:3556254‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 2:3752720‑M2/1‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:2214805‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:1907591‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:3256866‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:52832‑M2/2‑1 (MQ=255) gctgctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 2:3562703‑M2/2‑1 (MQ=255) ccTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTAc < 1:4639003/50‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:1768699‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 2:2531360‑M2/3‑1 (MQ=255) cTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACg < 2:1664020/50‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:1480781‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:1968009‑M2/47‑50 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:2858484‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:4080652‑M2/5‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 2:3182744‑M2/5‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 2:4451408‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 2:4885186‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:3203849‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:3141293‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 2:4336408‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:1618825‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 2:2476757‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:2329116‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:344221‑M2/10‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 2:73380‑M2/10‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 2:3555838‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtttcacccgcagcgcatagaACGCCATTTTg < 1:4046418‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:3831300‑M2/40‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:1204994‑M2/39‑49 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 2:5228135‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:128065‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:3911466‑M2/14‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:4415792‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:5046851‑M2/35‑49 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:4783020‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:1251069‑M2/32‑49 (MQ=255) acatcaatatgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 2:3767740‑M2/18‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGa < 1:2505464‑M2/20‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa > 1:3125905‑M2/30‑50 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa > 1:5065138‑M2/30‑50 (MQ=255) tcaatttgtgtcgcccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:3787415‑M2/22‑1 (MQ=255) acaaATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACg > 1:99505/1‑50 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:1110994‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 2:2426572‑M2/23‑1 (MQ=255) aatttgtggcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 2:5391383‑M2/24‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:3174841‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 2:3545732‑M2/27‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 2:1539563‑M2/27‑1 (MQ=255) taaatTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGc < 2:4651263/50‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGc < 1:1496169‑M2/28‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:583633‑M2/22‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa < 1:728229‑M2/29‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:3245421‑M2/30‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 2:5109850‑M2/21‑50 (MQ=255) gtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 2:3689595‑M2/20‑49 (MQ=255) gtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:3414757‑M2/20‑49 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAtt < 2:5340469‑M2/31‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:1190914‑M2/34‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:3477066‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:1382572‑M2/35‑1 (MQ=255) aGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:870075/49‑1 (MQ=255) gCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCa < 2:111448/49‑1 (MQ=255) gCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:2685909/1‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:2187176‑M2/15‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 2:4189606‑M2/15‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:163721‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt < 1:1333141‑M2/37‑1 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:2844186‑M2/13‑49 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 2:3112776‑M2/13‑49 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:1915147‑M2/13‑49 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:1063119‑M2/13‑49 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:142477‑M2/39‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa > 2:4769976‑M2/12‑50 (MQ=255) agcgcatagaGCGCCATTTTGAATTTACGAGCGGACGCATTATCAGTGAc < 2:4572349‑M2/40‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:4065990‑M2/9‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 2:900600‑M2/9‑50 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:144550‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 2:1173998‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:4860823‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:2483441‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 2:579115‑M2/7‑49 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 2:4336150‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:208596‑M2/5‑50 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:1515084‑M2/4‑50 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 2:611202‑M2/4‑50 (MQ=255) aTTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:1366819/50‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 2:1099382‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:4743407‑M2/47‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:5072803‑M2/2‑49 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa < 2:1944696/50‑1 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |