| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 13 (0.120) | 81 (0.770) +GA |
49/94 | 0.4 | 88.9% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 8 (0.070) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110631‑3110728 | cAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCatat < 1:1105653/50‑1 (MQ=255) aGGCTTCTCAGCAGCGCTGACATCAATTTGTGTCACCCGCAGCGCATAga < 2:4794775‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:353576‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAga < 2:1908008‑M1/50‑3 (MQ=255) aGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:4292293‑M1/1‑48 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 2:711888‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:4666068‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 2:3752720‑M1/50‑4 (MQ=255) ggCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 2:3556254‑M1/50‑4 (MQ=255) gctgctCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 2:3562703‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtttt > 1:4777534/1‑50 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:2214805‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:3256866‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:52832‑M1/50‑5 (MQ=255) gCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaac < 1:1907591‑M1/50‑5 (MQ=255) cTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAttttt < 2:4036371/50‑1 (MQ=255) cTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacg < 2:2531360‑M1/50‑6 (MQ=255) cTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacg > 1:1768699‑M1/1‑45 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:1480781‑M1/1‑44 (MQ=255) ttCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:1968009‑M1/1‑44 (MQ=255) tctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgc > 1:2858484‑M1/1‑43 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcc < 1:4080652‑M1/49‑8 (MQ=255) ctcAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgcc < 2:3182744‑M1/49‑8 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 2:4885186‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:3203849‑M1/50‑12 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt < 2:4451408‑M1/50‑12 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:3141293‑M1/1‑39 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 2:2476757‑M1/49‑11 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:1618825‑M1/49‑11 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 2:4336408‑M1/49‑11 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:2329116‑M1/48‑10 (MQ=255) agcagcACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATcc < 2:1972896/49‑1 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 2:3555838‑M1/50‑13 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:344221‑M1/50‑13 (MQ=255) gcagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt < 2:73380‑M1/50‑13 (MQ=255) cagcaCTGACATCAATTTGTTTCACCCGCAGCGCATAgaacgccattttg < 1:4046418‑M1/50‑14 (MQ=255) cagcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:3831300‑M1/1‑37 (MQ=255) agcaCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttg > 1:1204994‑M1/1‑36 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 1:128065‑M1/50‑17 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 2:5228135‑M1/50‑17 (MQ=255) caCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaat < 1:3911466‑M1/50‑17 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt < 1:4415792‑M1/50‑18 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatt > 1:5046851‑M1/1‑32 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt > 1:3726972/1‑49 (MQ=255) gACATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:4783020‑M1/1‑30 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttac > 1:1251069‑M1/1‑29 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGttt < 2:2933342/48‑1 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGttt < 2:3190205/48‑1 (MQ=255) aCATCAATATGTGTCACCCGCAGCGCATAgaacgccattttgaatttac < 2:3767740‑M1/49‑21 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacga < 1:2505464‑M1/50‑23 (MQ=255) aTCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaa > 1:5065138‑M1/1‑27 (MQ=255) aTCAATTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaa > 1:3125905‑M1/1‑27 (MQ=255) tCAATTTGTGTCGCCCGCAGCGCATAgaacgccattttgaatttacgaac < 1:3787415‑M1/50‑25 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacgg < 1:1110994‑M1/50‑27 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacg < 2:2426572‑M1/49‑26 (MQ=255) aaTTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCAtt < 1:324609/50‑1 (MQ=255) aaTTTGTGGCACCCGCAGCGCATAgaacgccattttgaatttacgaacgg < 2:5391383‑M1/50‑27 (MQ=255) tttGTGTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggac < 1:3174841‑M1/50‑29 (MQ=255) tttGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTc < 2:2917901/50‑1 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg < 2:3545732‑M1/49‑30 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacg < 2:1539563‑M1/49‑30 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca > 1:583633‑M1/1‑19 (MQ=255) gtgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgc < 1:1496169‑M1/49‑31 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 2:5109850‑M1/1‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat < 1:3245421‑M1/50‑33 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgca < 1:728229‑M1/49‑32 (MQ=255) tgtCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTcag > 1:844766/1‑48 (MQ=255) gtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 2:3689595‑M1/1‑17 (MQ=255) gtCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcat > 1:3414757‑M1/1‑17 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcatt < 2:5340469‑M1/49‑34 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:3477066‑M1/50‑37 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatc < 1:1190914‑M1/50‑37 (MQ=255) cccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatca < 1:1382572‑M1/50‑38 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:2187176‑M1/1‑12 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 2:4189606‑M1/1‑12 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcag > 1:163721‑M1/1‑12 (MQ=255) ccGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCAt < 2:1587379/50‑1 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt < 1:1333141‑M1/50‑40 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 2:3112776‑M1/1‑10 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:1915147‑M1/1‑10 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:1063119‑M1/1‑10 (MQ=255) gCAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagt > 1:2844186‑M1/1‑10 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga < 1:142477‑M1/50‑42 (MQ=255) cAGCGCATAgaacgccattttgaatttacgaacggacgcattatcagtga > 2:4769976‑M1/1‑9 (MQ=255) aGCGCATAgagcgccattttgaatttacgagcggacgcattatcagtgac < 2:4572349‑M1/50‑43 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 2:900600‑M1/1‑6 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:4065990‑M1/1‑6 (MQ=255) cgcATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAaca > 1:4070922/1‑50 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:144550‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 2:1173998‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt < 1:4860823‑M1/50‑46 (MQ=255) gcATAgaacgccattttgaatttacgaacggacgcattatcagtgactt > 1:2483441‑M1/1‑5 (MQ=255) cATAgaacgccattttgaatttacgaacggacgcattatcagtgacttt > 2:579115‑M1/1‑4 (MQ=255) cATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAAcacc < 1:1521745/50‑1 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 1:208596‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcattatcagtgactttaac > 2:4336150‑M1/1‑2 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 1:1515084‑M1/1‑1 (MQ=255) agaacgccattttgaatttacgaacggacgcattatcagtgactttaacg > 2:611202‑M1/1‑1 (MQ=255) | CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACA > NC_000913/3110631‑3110728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |