| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 11 (0.100) | 108 (1.100) | 67/88 | 0.0 | 91.6% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 10 (0.100) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 133 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 2:4941280‑M1/50‑1 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGACTGAGGTCATGGAAACGGAAATCTTCc < 1:4985716‑M1/50‑2 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 2:5060826‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:749946‑M1/49‑3 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCaa < 1:220215/49‑1 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGACATCTTCAATTc > 2:2645095/1‑50 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 2:11266‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 2:589748‑M1/1‑45 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:2823177‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTc < 1:631736/50‑1 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:4332583‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2474516‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:3171761‑M1/50‑7 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:4777928‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:3524892‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:675572‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 1:3168116‑M1/1‑42 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 2:1227732‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 2:2500220‑M1/1‑41 (MQ=255) ttGCCCAGGTGTGTCTGAGGTCATGGAAACGGTAATCTTCATTTCCTGCa > 1:4177924/1‑50 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 1:5131860‑M1/1‑39 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 2:3665971‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGCCATGGAAACGGAAATCTTCctcatttatgcc > 1:4274273‑M1/1‑38 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 2:2355496‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 2:4621109‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:98394‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 2:4121540‑M1/1‑36 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 1:431698‑M1/50‑16 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 2:5326395‑M1/50‑16 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 2:1069639‑M1/1‑35 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt < 1:3077623‑M1/50‑16 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc < 1:1692882‑M1/50‑17 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc < 1:4548343‑M1/50‑17 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 2:89927‑M1/50‑18 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:332966‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:4724237‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:2454337‑M1/50‑20 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:3719258‑M1/1‑30 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:2002652‑M1/1‑30 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:4124512‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGc > 1:1665491/1‑50 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 2:1959412‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 2:2297779‑M1/50‑24 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGa > 2:1638339/1‑50 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 2:5147514‑M1/1‑25 (MQ=255) aGGTCATGGAAGCGGAAAGCTTCctcatttatgcccgccgtatccgtt < 1:5164097‑M1/48‑26 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc > 2:4638061‑M1/1‑23 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:5260779‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 2:4016026‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:3751566‑M1/48‑26 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:2811032‑M1/1‑22 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 2:3880415‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:1346499‑M1/1‑22 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 2:3179066‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 2:335212‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGc > 2:19184/1‑50 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 2:917963‑M1/50‑30 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:3651030‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGcc < 2:904958/50‑1 (MQ=255) gTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGc > 1:1669763/1‑49 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:1008919‑M1/50‑31 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 2:3993133‑M1/1‑20 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc < 1:746295‑M1/50‑31 (MQ=255) aTGGAAACGGAATTCTTCctcatttatgcccgtcttatccgtttccgctt < 2:554883‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:2757225‑M1/49‑32 (MQ=255) aTGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCatg < 1:592200/50‑1 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:863990‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 2:5183766‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:5272507‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt > 2:4988042‑M1/1‑17 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccggcttatccgtttccgcttt < 2:167002‑M1/50‑34 (MQ=255) ggAAACGGACATCTTCctcatttatgcccgccttatccgtttccgctttg > 2:74678‑M1/1‑16 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 2:2847485‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:4817826‑M1/1‑15 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 2:3293158‑M1/1‑14 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:2331880‑M1/1‑13 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:3481505‑M1/50‑38 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 2:1927236‑M1/50‑38 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:3834530‑M1/50‑38 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 2:1496122‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 2:4722878‑M1/50‑39 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 2:3184169‑M1/50‑40 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 2:2161380‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 2:4081598‑M1/1‑10 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 2:4075234‑M1/50‑42 (MQ=255) gAAATCGTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:4655507‑M1/50‑42 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:3786035‑M1/50‑43 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:2651140‑M1/1‑8 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 2:3624662‑M1/50‑44 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:1106922‑M1/50‑45 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:3272798‑M1/1‑6 (MQ=255) attcctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 2:568924‑M1/2‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:3990962‑M1/1‑3 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:5289331‑M1/1‑3 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:650498‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:766803‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 2:3618598‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 2:3108617‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 2:1668384‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:1402761‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |