| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 11 (0.100) | 108 (1.100) | 67/88 | 0.0 | 91.6% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 10 (0.100) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 132 total aligned reads displayed.
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:2656536‑M2/1‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt < 1:749946‑M2/2‑1 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 2:5060826‑M2/3‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa < 1:4290656‑M2/4‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa < 2:3078304‑M2/4‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:4054366‑M2/5‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 2:589748‑M2/46‑50 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 2:11266‑M2/5‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:2823177‑M2/5‑1 (MQ=255) tCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCAtt > 1:28526/1‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 2:4332583‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt < 1:3171761‑M2/6‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:4777928‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 2:3524892‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 2:675572‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:3513235‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtaatggaaacggaaatcttcCTCAtt > 2:3230438‑M2/44‑49 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 1:3168116‑M2/43‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 2:1227732‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:5357204‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 2:2500220‑M2/42‑50 (MQ=255) tgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc > 1:5131860‑M2/40‑50 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 2:3665971‑M2/10‑1 (MQ=255) gcccaggtgtgtctgaggccatggaaacggaaatcttcCTCATTTATGcc > 1:4274273‑M2/39‑50 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 1:2422395‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 1:3009566‑M2/13‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:98394‑M2/14‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 2:4621109‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 2:4121540‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 2:2355496‑M2/37‑50 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 2:5326395‑M2/15‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 2:2467359‑M2/15‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 1:431698‑M2/15‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt > 2:1069639‑M2/36‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc < 1:1692882‑M2/16‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt < 2:89927‑M2/17‑1 (MQ=255) aGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCt < 1:640976/50‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:332966‑M2/33‑49 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:2454337‑M2/19‑1 (MQ=255) gTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTa < 2:1710234/50‑1 (MQ=255) ttCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTAt < 2:5295805/50‑1 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:3719258‑M2/31‑50 (MQ=255) gtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc > 1:4681310‑M2/29‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg < 2:1959412‑M2/23‑1 (MQ=255) gAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATcc < 1:1968186/49‑1 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:670067‑M2/27‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 2:5147514‑M2/26‑50 (MQ=255) aggtcatggaagcggaaagcttcCTCATTTATGCCCGCCGTATCCGtt < 1:5164097‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 2:4016026‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:5260779‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:3751566‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc > 2:4638061‑M2/24‑50 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 2:3179066‑M2/28‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc > 1:1346499‑M2/23‑50 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 2:3880415‑M2/28‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 2:335212‑M2/28‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 2:917963‑M2/29‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:3651030‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 2:1595265‑M2/29‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:1008919‑M2/30‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 2:3993133‑M2/21‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:746295‑M2/30‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:1916815‑M2/21‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 2:1882272‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:2757225‑M2/31‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:863990‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 2:5183766‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt > 2:4988042‑M2/18‑50 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGGCTTATCCGTTTCCGCttt < 2:167002‑M2/33‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 2:2847485‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:4817826‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc < 1:3233411‑M2/35‑1 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc < 1:3834530‑M2/37‑1 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc > 1:2331880‑M2/14‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc < 1:3481505‑M2/37‑1 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt < 2:4722878‑M2/38‑1 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt > 2:1496122‑M2/13‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 2:3184169‑M2/39‑1 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 2:4081598‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 2:1998409‑M2/40‑1 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 2:2161380‑M2/40‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 2:4075234‑M2/41‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca > 2:885373‑M2/10‑50 (MQ=255) gaaatcgtcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:4655507‑M2/41‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:3786035‑M2/42‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:2651140‑M2/9‑50 (MQ=255) tttCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:4697345/50‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcgcc < 2:370260‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 2:3624662‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 2:3537283‑M2/8‑49 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca < 1:1106922‑M2/44‑1 (MQ=255) attcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 2:568924‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:3990962‑M2/4‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:5289331‑M2/4‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:1402761‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:4921493‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 2:3108617‑M2/2‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 2:3618598‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa < 2:4768/49‑1 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc > 2:537158/1‑50 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |