| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 10 (0.090) | 111 (1.010) | 57/98 | 0.1 | 90.6% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 13 (0.120) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 125 total aligned reads displayed.
GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 | gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:4247199/50‑1 (MQ=255)gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:1475188/1‑50 (MQ=255) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 2:3835844/1‑49 (MQ=38) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 1:393225/1‑49 (MQ=38) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCCGCCATACtat > 2:5215530‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:1836900‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 2:1488310‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:2740692‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 2:3514038‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:2550098‑M1/1‑47 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:725151‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:1513384‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:3663864‑M1/1‑46 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 2:524827‑M1/1‑45 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATaccac > 1:1998121/1‑49 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:4024954‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:1116333‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 2:4152716‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACAGC‑GCAGCCATACtatgca < 2:2276548‑M1/50‑7 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:4490945‑M1/1‑43 (MQ=255) ggCAGACCGACAAGGTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 2:3603924‑M1/49‑8 (MQ=255) ggCAGACCGACAAGATACCGCGCCAGCAACATCAGCAGCCATAcaacca < 1:1745060/49‑1 (MQ=39) gCAGACCGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:757698‑M1/50‑10 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa < 1:3520184‑M1/50‑11 (MQ=255) aGACTGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 2:235366‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaa > 1:4240752/1‑48 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 2:2484021‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 2:3942373‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:3447053‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 2:1317150‑M1/50‑13 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac > 1:2300411‑M1/1‑38 (MQ=255) aCCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaa > 2:3698422/1‑46 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:1017874‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:3608696‑M1/50‑15 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat > 2:2247009‑M1/1‑36 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:3375119‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:656151‑M1/1‑35 (MQ=255) gACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGAt > 1:4864632/1‑48 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:4183500‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:675691‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCAAACtatgcagaaacaatgc > 2:4174205‑M1/1‑34 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 2:1592199‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct > 1:1956669‑M1/1‑33 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:545740‑M1/50‑18 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 2:2874351‑M1/1‑32 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 2:1114170‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:906676‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:4520028‑M1/50‑19 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 2:3373286‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 2:3673665‑M1/1‑31 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 2:2952782‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:4089028‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 2:4453298‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:5384981‑M1/1‑30 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:2395287‑M1/50‑22 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 2:3374714‑M1/1‑28 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:4388648‑M1/50‑23 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:4700600‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:3940079‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat > 2:547668‑M1/1‑27 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 2:2878171‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 1:3735321‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:2046190‑M1/49‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:5012823‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:3963888‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 2:797130‑M1/50‑28 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 2:1316140‑M1/1‑23 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 2:4273631‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg > 2:3815355‑M1/1‑22 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:1066729‑M1/1‑21 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 2:212463‑M1/1‑21 (MQ=255) gCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGAc > 1:4312849/1‑49 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgtc < 1:180435‑M1/48‑39 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgtc < 2:4494300‑M1/48‑39 (MQ=255) tcgcagccaTACtaagcagaaacaatgctgtcgatggctgcttttgcgt > 2:556576‑M1/3‑12 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:4200158‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga < 2:2368425‑M1/50‑42 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 2:715681‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 2:749851‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:2482198‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 1:2973493‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 2:4402597‑M1/1‑8 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact > 2:3380753‑M1/1‑7 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 2:1798354‑M1/1‑6 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg < 2:2865947‑M1/50‑45 (MQ=255) ccATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATagtaag > 1:2844656/1‑50 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:3288844‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:4708411‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 2:1383885‑M1/50‑46 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:4190662‑M1/1‑4 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:2343851‑M1/1‑4 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:130323‑M1/1‑4 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 2:2591754‑M1/1‑4 (MQ=255) aTACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATagtaagta > 1:462544/1‑50 (MQ=255) aTACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATagtaagta > 2:4780689/1‑50 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc < 2:4182574‑M1/50‑48 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc > 1:1994549‑M1/1‑3 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc < 1:4913955‑M1/50‑48 (MQ=255) ctatgcagaaacactgctgtcgatggctgcttttgcgtcagactgtgctt > 2:1259079‑M1/1‑1 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 2:223794‑M1/49‑49 (MQ=255) | GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |