| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 14 (0.130) | 157 (1.430) | 75/98 | 0.0 | 91.5% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 15 (0.140) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 177 total aligned reads displayed.
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAAC > NC_000913/2466495‑2466590 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc < 1:3075335/50‑1 (MQ=255)aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:1581631/1‑50 (MQ=255)aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc < 1:4297367/50‑1 (MQ=255)aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:4341624/1‑50 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:2030993/1‑48 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtag < 1:4158190‑M1/50‑4 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtag < 2:4490329‑M1/50‑4 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:2460649‑M1/49‑3 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 2:5001900‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:1282354‑M1/50‑5 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 2:1081954‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag > 1:810250‑M1/1‑45 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:562507‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:3493559‑M1/1‑44 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:3371758‑M1/50‑8 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:1626611‑M1/1‑43 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca < 2:3486018‑M1/50‑9 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 2:3969231‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:4286221‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:1879060‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:4190459‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:685695‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1181743‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:3124022‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 2:3039817‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 2:3255421‑M1/49‑10 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCAcc < 2:645277/49‑1 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 2:2515109‑M1/50‑12 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:3947651‑M1/1‑39 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 2:4414201‑M1/1‑38 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 2:3763999‑M1/50‑16 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAg > 1:3033805/1‑50 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:4464578‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct < 2:4550064‑M1/49‑17 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 2:3519522‑M1/1‑31 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 2:3207841‑M1/1‑30 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:2229388‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 2:3172586‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:1032017‑M1/50‑22 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:1867435‑M1/50‑22 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 2:2417954‑M1/1‑28 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 2:1415682‑M1/1‑28 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:2740941‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:3046860‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:5314908‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:2349293‑M1/1‑27 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 2:404681‑M1/50‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 2:494340‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2432331‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:2552412‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 2:3660549‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAag < 1:124287/49‑1 (MQ=255) atTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAag > 1:639340/1‑49 (MQ=255) ttttACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAag > 1:4812277/1‑48 (MQ=255) tttACCCACCGGATTTTTCCCCtagagccatacagcctcacactcgat > 2:4752028‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:880786‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 2:3026297‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3134410‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 2:1886842‑M1/49‑29 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 2:286750‑M1/49‑29 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:2070384‑M1/1‑20 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 2:3816709‑M1/1‑20 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 2:3703699‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc < 2:368753‑M1/50‑33 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:4865639‑M1/1‑18 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 2:4858223‑M1/50‑34 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 2:4862172‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 2:5203652‑M1/1‑17 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 2:4610894‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:2502607‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg > 1:5085901‑M1/1‑16 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1379383‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 2:4362695‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:5173080‑M1/1‑15 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtc < 1:4733898‑M1/50‑37 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 2:1113292‑M1/50‑38 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 2:2680867‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:4508010‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 2:4124004‑M1/1‑11 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 2:1921948‑M1/1‑11 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 2:2129956‑M1/50‑40 (MQ=255) gATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCgaaa < 2:4961388/50‑1 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:2162560‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 2:5009566‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:3689534‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 2:5257849‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:4770949‑M1/50‑41 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 2:4427146‑M1/50‑42 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:5289221‑M1/50‑42 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 2:4443828‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 2:1022614‑M1/1‑7 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 2:4688267‑M1/1‑7 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:3337853‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 2:2533752‑M1/1‑6 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt > 1:672517‑M1/1‑5 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:1004379‑M1/49‑45 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 2:3306850‑M1/1‑4 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:2283991‑M1/49‑46 (MQ=255) aCCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAAc > 2:1660832/1‑50 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa > 2:4567609‑M1/1‑3 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAAC > NC_000913/2466495‑2466590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |