| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 14 (0.130) | 157 (1.430) | 75/98 | 0.0 | 91.5% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 15 (0.140) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 174 total aligned reads displayed.
GAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476132‑2476228 | acgggtaaaaagtggataaaataattttacccaccggatttttacccTag < 1:4158190‑M2/3‑1 (MQ=255)acgggtaaaaagtggataaaataattttacccaccggatttttacccTag < 2:4490329‑M2/3‑1 (MQ=255)acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:2460649‑M2/2‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:1282354‑M2/4‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 1:1899728‑M2/4‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 2:4948607‑M2/4‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTaga < 2:5001900‑M2/4‑1 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag < 2:1081954‑M2/5‑1 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:810250‑M2/46‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc < 1:562507‑M2/6‑1 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:3493559‑M2/45‑50 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGcc < 1:4751790‑M2/7‑1 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:1626611‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 2:5067768‑M2/43‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 2:3039817‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4190459‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:3124022‑M2/10‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4286221‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:4324888‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 2:1605625‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:1181743‑M2/41‑50 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa < 1:1879060‑M2/10‑1 (MQ=255) aaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:3947651‑M2/40‑49 (MQ=255) tCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATa > 2:1739517/1‑48 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc < 2:3763999‑M2/15‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 2:4550064‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:1419432‑M2/34‑49 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 2:3770791‑M2/17‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:4464578‑M2/17‑1 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:3365394‑M2/33‑50 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 2:4649950‑M2/32‑49 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 2:2157912‑M2/32‑49 (MQ=255) aaaataattttacccaccggctttttacccTAGAGCCATACAGCCTcaca > 2:3701996‑M2/31‑50 (MQ=255) aaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca > 1:2229388‑M2/31‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:1250019‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac < 1:1032017‑M2/21‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:4725441‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:3268074‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:2537782‑M2/30‑50 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt > 2:1415682‑M2/29‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:2349293‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:5314908‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 2:5203922‑M2/28‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:3046860‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCg < 2:404681‑M2/24‑1 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 2:494340‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 2:2552412‑M2/25‑50 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 2:3026297‑M2/23‑48 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:880786‑M2/23‑48 (MQ=255) ttacccaccggttttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 2:3843386‑M2/22‑50 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 2:286750‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 2:1886842‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 2:417843‑M2/22‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:2070384‑M2/21‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg < 2:3354010‑M2/29‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:662603‑M2/30‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc < 2:368753‑M2/32‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:4865639‑M2/19‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:2452950‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 2:5203652‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 2:4862172‑M2/18‑50 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg > 2:4604289‑M2/17‑50 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg > 1:5085901‑M2/17‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:5173080‑M2/16‑50 (MQ=255) aaGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:240392/1‑49 (MQ=255) agagGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 2:2691881/1‑48 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg < 2:646296‑M2/38‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:4508010‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 2:2680867‑M2/13‑50 (MQ=255) gagGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 2:1960182/1‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 2:4124004‑M2/12‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 2:4373226‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 2:5257849‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:4770949‑M2/40‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:3689534‑M2/40‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt > 2:3505544‑M2/11‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:2162560‑M2/40‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 2:3041470‑M2/40‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 2:1186809‑M2/10‑50 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 2:4427146‑M2/41‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 1:526257‑M2/41‑1 (MQ=255) ttttccccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 2:4857213‑M2/9‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 2:4443828‑M2/9‑50 (MQ=255) tGAAATAATAGAGCCATACAGCCTCACGCTCGATGAGGCCTGTCAGTTTc < 2:2463357/50‑1 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc < 2:2466983‑M2/42‑1 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 2:1022614‑M2/8‑50 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 2:4688267‑M2/8‑50 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt < 1:3133983‑M2/43‑1 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 2:2533752‑M2/7‑49 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 2:3633658‑M2/7‑49 (MQ=255) aaaTAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:900162/50‑1 (MQ=255) aaaTAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt < 1:723468/49‑1 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:1004379‑M2/44‑1 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt > 1:672517‑M2/6‑49 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa < 1:2283991‑M2/45‑1 (MQ=255) acccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTa > 2:3306850‑M2/5‑49 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 2:322976‑M2/4‑49 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa > 2:3191174‑M2/4‑49 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:3496806‑M2/3‑50 (MQ=255) ataGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 2:3716495/1‑49 (MQ=255) | GAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476132‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |