| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 9 (0.080) | 117 (1.070) | 62/98 | 0.0 | 92.5% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 10 (0.090) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
Only 100 of 132 total aligned reads displayed.
TTTGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTCCCCGCCGT > NC_000913/2509581‑2509679 | tttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:282222/1‑50 (MQ=255)tttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:3023530/1‑50 (MQ=255)tttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:548021/1‑50 (MQ=255) tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:2990328/1‑48 (MQ=255) tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAc < 1:1068320‑M1/49‑2 (MQ=255) tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAc < 1:3413896‑M1/49‑2 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 1:2837128‑M1/49‑3 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 2:3963393‑M1/49‑3 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 1:459932‑M1/49‑3 (MQ=255) aGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcg > 1:3252219‑M1/1‑44 (MQ=255) cTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggc < 1:4728134‑M1/50‑9 (MQ=255) cTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcgg > 2:2386096‑M1/1‑42 (MQ=255) tGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggca > 1:982923‑M1/1‑41 (MQ=255) tGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggca > 2:761855‑M1/1‑41 (MQ=255) tGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATc > 2:3692701/1‑50 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 2:4004459‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 1:2242323‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 2:5221230‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcac > 1:2789953‑M1/1‑39 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcac > 2:3656596‑M1/1‑39 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcac < 2:5181797‑M1/49‑11 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATcc < 2:2953780/49‑1 (MQ=255) cAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaa > 1:1341952‑M1/1‑37 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac > 2:30592‑M1/1‑36 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac < 1:1461134‑M1/50‑15 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac > 2:550549‑M1/1‑36 (MQ=255) aaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacc > 2:4390201‑M1/1‑35 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 2:77794‑M1/50‑17 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 2:2751589‑M1/50‑17 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 2:3315968‑M1/50‑17 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc > 2:1847279‑M1/1‑34 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc > 2:1831832‑M1/1‑34 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 1:4159473‑M1/50‑17 (MQ=255) cTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccg < 1:784086‑M1/50‑18 (MQ=255) aGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccgga < 1:479998‑M1/49‑20 (MQ=255) tATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgt < 1:3366584‑M1/50‑23 (MQ=255) aTCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacg > 2:5229924‑M1/1‑27 (MQ=255) aTCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAAc > 1:2434986/1‑49 (MQ=255) tCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:3106149‑M1/49‑24 (MQ=255) tCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:1128845‑M1/49‑24 (MQ=255) tCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacg > 2:1811345‑M1/1‑26 (MQ=255) gatgaCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtag > 2:3325868‑M1/3‑26 (MQ=255) tGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac > 2:1887248‑M1/1‑24 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactg < 2:1296948‑M1/50‑29 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact < 1:1279353‑M1/49‑28 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact < 2:1604139‑M1/49‑28 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac < 2:4752733‑M1/48‑27 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac < 1:2194244‑M1/48‑27 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtag < 1:1199933‑M1/46‑25 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaaccaggacgtagact < 1:3189102‑M1/49‑28 (MQ=255) ccccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgt < 1:4920255‑M1/50‑30 (MQ=255) cccGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCAtgttgt > 2:4818144/1‑50 (MQ=255) ccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat < 2:1275096‑M1/50‑32 (MQ=255) ccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat < 2:4638025‑M1/50‑32 (MQ=255) ccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat > 2:38195‑M1/1‑19 (MQ=255) cGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatt < 1:3378420‑M1/50‑33 (MQ=255) gCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta < 2:2167151‑M1/50‑34 (MQ=255) gCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta > 2:4970914‑M1/1‑17 (MQ=255) gCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta < 2:2771998‑M1/50‑34 (MQ=255) cATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta > 2:4913909‑M1/1‑16 (MQ=255) cATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta > 1:4974117‑M1/1‑16 (MQ=255) cATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGttatt < 2:1002181/50‑1 (MQ=255) aTAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattaca < 1:3639316‑M1/50‑36 (MQ=255) aTAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattaca < 1:3701796‑M1/50‑36 (MQ=255) aTAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattac > 1:412547‑M1/1‑15 (MQ=255) aTAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattac > 1:1050903‑M1/1‑15 (MQ=255) aTAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGttatta < 2:4572171/50‑1 (MQ=255) tAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa < 1:3815496‑M1/50‑37 (MQ=255) tAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattaca > 2:5322032‑M1/1‑14 (MQ=255) tAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattaca > 2:3365624‑M1/1‑14 (MQ=255) tAAGGAATAGAACAcaggcggcactaacccggacgtagactgtattaca > 2:2818783‑M1/1‑14 (MQ=255) tAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTtattat > 2:2330508/1‑50 (MQ=255) aaGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa > 2:3355080‑M1/1‑13 (MQ=255) aaGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa > 2:4457455‑M1/1‑13 (MQ=255) aGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaaa < 2:1714046‑M1/49‑38 (MQ=255) aGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa > 2:5044191‑M1/1‑12 (MQ=255) ggAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaag > 2:1609490‑M1/1‑11 (MQ=255) ggAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaag > 2:1321974‑M1/1‑11 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc > 1:1657641‑M1/1‑10 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 2:4245132‑M1/50‑41 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 1:1557471‑M1/50‑41 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 1:5337458‑M1/50‑41 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc > 1:949869‑M1/1‑10 (MQ=255) aaTAGAACAcaggcggcactaacccggacgtcgactgtattacaaaagcg > 2:5011265‑M1/1‑9 (MQ=255) aaTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcg > 2:4859155‑M1/1‑9 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcgg > 1:4428996‑M1/1‑8 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattaaaaaagcgg > 2:3228649‑M1/1‑8 (MQ=255) aTAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTcc > 1:4744337/1‑50 (MQ=255) gAACAcaggcggcactaacccggacgtagactgtattacaaaagcggcaa < 2:719384‑M1/50‑46 (MQ=255) aaCAcaggcggcactaacccggacgtagactgtattacaaaagcggcaaa < 2:4018504‑M1/50‑47 (MQ=255) aaCAcaggcggcactaacccggacgtagactgtattacaaaagcggcaaa < 1:1933387‑M1/50‑47 (MQ=255) aaCAcaggcggcactaacccggacgtagactgtattacaaaagcggcaaa < 1:2833823‑M1/50‑47 (MQ=255) aaCAcaggcggcactaacccggacgtagactgtattacaaaagcggcaa > 1:1842991‑M1/1‑4 (MQ=255) aaCAcaggcggcactaacccggacgtagactgtattacaaaagcggcaa > 1:1361223‑M1/1‑4 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaa < 1:1979707‑M1/50‑49 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaa < 2:3567250‑M1/50‑49 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaa < 2:3136255‑M1/50‑49 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaa > 2:4068334‑M1/1‑2 (MQ=255) acaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaag > 2:691275‑M1/1‑1 (MQ=255) acaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaag > 1:3453312‑M1/1‑1 (MQ=255) | TTTGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTCCCCGCCGT > NC_000913/2509581‑2509679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |