| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 9 (0.080) | 117 (1.070) | 62/98 | 0.0 | 92.5% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 10 (0.090) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
Only 100 of 128 total aligned reads displayed.
AACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGC > NC_000913/2517902‑2517999 | tgcaagctgggcaaactaagtatctgaccccgcataaggaatagaacac < 1:1068320‑M2/1‑1 (MQ=255)tgcaagctgggcaaactaagtatctgaccccgcataaggaatagaacac < 1:3413896‑M2/1‑1 (MQ=255) gcaagctgggcaaactaagtatctgaccccgcataaggaatagaacaca < 1:459932‑M2/2‑1 (MQ=255) gcaagctgggcaaactaagtatctgaccccgcataaggaatagaacaca < 2:3963393‑M2/2‑1 (MQ=255) gcaagctgggcaaactaagtatctgaccccgcataaggaatagaacaca < 1:2837128‑M2/2‑1 (MQ=255) caagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAgg > 1:1435505‑M2/47‑50 (MQ=255) caagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAgg > 1:2837117‑M2/47‑50 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg > 1:3252219‑M2/45‑50 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg < 2:1825956‑M2/6‑1 (MQ=255) gctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 2:4191266‑M2/44‑50 (MQ=255) ctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 2:2386096‑M2/43‑49 (MQ=255) tgggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCa > 1:982923‑M2/42‑50 (MQ=255) tgggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCa > 2:2052895‑M2/42‑50 (MQ=255) tgggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCa > 2:761855‑M2/42‑50 (MQ=255) gggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCAc > 2:3891631‑M2/41‑50 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCAc > 1:2789953‑M2/40‑49 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCAc > 2:3656596‑M2/40‑49 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACt < 2:5221230‑M2/11‑1 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACt < 2:4004459‑M2/11‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa < 2:4925743‑M2/13‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 2:446110‑M2/38‑50 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa < 2:5129241‑M2/13‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 1:1341952‑M2/38‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc > 2:550549‑M2/37‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc > 2:30592‑M2/37‑50 (MQ=255) aactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAcc > 2:4390201‑M2/36‑50 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 2:1432898‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 2:3315968‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 2:77794‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 1:4159473‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 2:2751589‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc > 2:1831832‑M2/35‑50 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc > 2:1847279‑M2/35‑50 (MQ=255) ctaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCg < 1:784086‑M2/17‑1 (MQ=255) ctaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCg > 1:3051800‑M2/34‑50 (MQ=255) taagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCg > 1:3365545‑M2/33‑49 (MQ=255) gTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCg > 2:4989266/1‑49 (MQ=255) ttGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCg < 1:788209/48‑1 (MQ=255) agtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGa < 1:479998‑M2/19‑1 (MQ=255) agtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGAc < 1:1998694‑M2/20‑1 (MQ=255) tatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGt < 1:3366584‑M2/22‑1 (MQ=255) ccGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGt < 1:2566650/50‑1 (MQ=255) atctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACg > 2:5229924‑M2/28‑48 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACg > 2:1811345‑M2/27‑47 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:3106149‑M2/23‑1 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:2486450‑M2/23‑1 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:1128845‑M2/23‑1 (MQ=255) gatgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAg > 2:3325868‑M2/27‑50 (MQ=255) tttttCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGAc < 2:3067564/50‑1 (MQ=255) tttttCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGAc < 1:4566586/50‑1 (MQ=255) ttttCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACt > 2:1940999/1‑50 (MQ=255) gaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt > 1:1715007‑M2/24‑50 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAg < 1:1199933‑M2/24‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGAc < 1:2194244‑M2/26‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGAc < 2:4752733‑M2/26‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 1:5128081‑M2/27‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 2:1604139‑M2/27‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 1:1279353‑M2/27‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTg < 2:1296948‑M2/28‑1 (MQ=255) ccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGt < 1:4920255‑M2/29‑1 (MQ=255) ccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAt < 2:4638025‑M2/31‑1 (MQ=255) ccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAt < 2:1275096‑M2/31‑1 (MQ=255) cgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAtt < 1:949277‑M2/32‑1 (MQ=255) tCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTa < 2:4621558/50‑1 (MQ=255) gcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa < 2:2771998‑M2/33‑1 (MQ=255) gcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa < 2:2167151‑M2/33‑1 (MQ=255) gcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 2:1123927‑M2/18‑50 (MQ=255) cataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 2:4913909‑M2/17‑49 (MQ=255) cataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 1:4974117‑M2/17‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:412547‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:1050903‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 2:3631086‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACa < 1:3639316‑M2/35‑1 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACa < 1:3701796‑M2/35‑1 (MQ=255) taaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACa > 2:2818783‑M2/15‑49 (MQ=255) aaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaa > 2:3355080‑M2/14‑49 (MQ=255) aggaatagaacaCAGGCGGCACTAACCGGGACGTAGACTGTATTACgaa < 2:708037‑M2/37‑1 (MQ=255) aggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaa > 2:5044191‑M2/13‑48 (MQ=255) ggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAg > 2:1609490‑M2/12‑50 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc < 2:4245132‑M2/40‑1 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc < 1:1557471‑M2/40‑1 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc > 1:1657641‑M2/11‑50 (MQ=255) aatagaacaCAGGCGGCACTAACCCGGACGTCGACTGTATTACAAAAGCg > 2:5011265‑M2/10‑50 (MQ=255) aatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCg > 2:4859155‑M2/10‑50 (MQ=255) atagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCgg > 1:4428996‑M2/9‑50 (MQ=255) cTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCgg > 2:3676485/1‑49 (MQ=255) cTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGc < 1:4703004/50‑1 (MQ=255) gaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaa < 2:719384‑M2/45‑1 (MQ=255) aacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa < 1:1933387‑M2/46‑1 (MQ=255) aacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa < 2:313826‑M2/46‑1 (MQ=255) aacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa < 1:4108713‑M2/46‑1 (MQ=255) aacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaa > 1:1361223‑M2/5‑49 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaaaa < 2:3136255‑M2/48‑1 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaaaa < 1:1979707‑M2/48‑1 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaaaa < 2:3567250‑M2/48‑1 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa > 2:4068334‑M2/3‑48 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 2:5232203‑M2/2‑50 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 2:691275‑M2/2‑50 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg > 1:3453312‑M2/2‑50 (MQ=255) cAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGc < 2:924568/50‑1 (MQ=255) | AACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGC > NC_000913/2517902‑2517999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |