| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 8 (0.070) | 135 (1.230) | 69/98 | 0.0 | 91.5% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 17 (0.160) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 147 total aligned reads displayed.
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 2:4848376/50‑1 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 2:3083055/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 2:1864114/50‑1 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 2:1714051‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 2:971100‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 2:3523526‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:1270244‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 2:341352‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:5130550‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 2:2832288‑M1/49‑3 (MQ=255) tCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:3759362‑M1/1‑46 (MQ=255) cAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac > 2:3259357‑M1/1‑45 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:2067485‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac < 1:914413‑M1/48‑5 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:1701584‑M1/1‑42 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 2:4351074‑M1/1‑42 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 2:2669475‑M1/1‑41 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 1:2355607‑M1/1‑41 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:3035951‑M1/50‑10 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:850799‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:1148511‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc < 2:651825‑M1/50‑11 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 2:1474299‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 2:2499453‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 2:852614‑M1/50‑12 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 2:2028981‑M1/1‑39 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 2:1080731‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:5173017‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAgg < 1:5140419/50‑1 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:4425281‑M1/1‑37 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1050955‑M1/1‑37 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:370644‑M1/49‑15 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 2:598235‑M1/1‑35 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 2:2313394‑M1/1‑35 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggaca < 2:5341655‑M1/49‑16 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 2:2792400‑M1/1‑33 (MQ=255) attCACTGTATTTAGAACAACATCAATGAATACtaacaatgccggacagg < 2:1256856‑M1/50‑18 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATTCCTTAGCCACAGGGATGGt < 2:3359548/50‑1 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 2:1765653‑M1/1‑32 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 2:4761402‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 2:5171482‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 2:3348891‑M1/49‑21 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:1857380‑M1/49‑21 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:3202877‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 2:1336187‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:5179567‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 2:3286205‑M1/50‑23 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 2:4432925‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 2:2983158‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 2:5262408‑M1/50‑23 (MQ=255) gTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta > 2:2200124‑M1/1‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 2:2951043‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:302957‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta < 1:5387218‑M1/49‑25 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:149286‑M1/1‑23 (MQ=255) ttATAACAACATCAATGAATACtaacaatgccggacaggagtactatcag > 1:3476370‑M1/1‑22 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:529931‑M1/49‑29 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:3938050‑M1/49‑30 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 2:243929‑M1/49‑30 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:746626‑M1/49‑30 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 2:4842437‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 2:4494791‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 2:1041690‑M1/49‑31 (MQ=255) taACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCa < 1:1087927/50‑1 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 2:2890033‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:3306560‑M1/49‑33 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:4230463‑M1/1‑16 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:4192180‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 2:1884929‑M1/1‑16 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:678412‑M1/1‑16 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:3355813‑M1/1‑16 (MQ=255) aacaTCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTAt > 1:2785217/1‑50 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 2:710110‑M1/1‑13 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:1394346‑M1/50‑38 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 2:3164143‑M1/50‑38 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:257980‑M1/1‑12 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 2:4218390‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 2:3772046‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 2:2601127‑M1/1‑11 (MQ=255) tCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCt > 1:4487225/1‑50 (MQ=255) acaATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:3045960‑M1/2‑11 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:912322‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:5188433‑M1/49‑41 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 2:2458675‑M1/1‑9 (MQ=255) aaTGAATACtaacaatgccggacaggagcactatcaggcattcgtttta > 2:437888‑M1/1‑9 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 2:4553792‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 2:4755664‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 2:3664176‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 2:965453‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 2:1652055‑M1/50‑44 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:2238191‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 2:4146394‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 2:2655056‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:2039667‑M1/50‑48 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:2689784‑M1/1‑2 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg < 2:1446557‑M1/50‑50 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:3944294‑M1/49‑49 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:666699‑M1/49‑49 (MQ=255) ccTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTtgatga > 2:4922885/1‑49 (MQ=255) ccTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTtgatga < 2:2398161/49‑1 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |