| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 8 (0.070) | 135 (1.230) | 69/98 | 0.0 | 91.5% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 17 (0.160) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 154 total aligned reads displayed.
AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 | gctcagacacattacattcactgtatttataacaacatcaatgaatact > 2:2473312‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 2:971100‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:1270244‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 2:1714051‑M2/3‑1 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:5130550‑M2/2‑1 (MQ=255) aaaTCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATaa < 1:4610959/50‑1 (MQ=255) tcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:3759362‑M2/47‑49 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 2:3259357‑M2/46‑49 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:2067485‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 2:907019‑M2/6‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 2:4863067‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:1701584‑M2/43‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:2355607‑M2/42‑50 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:3035951‑M2/9‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 2:1474299‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 2:651825‑M2/10‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:1148511‑M2/41‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgattacTAACAATGCCg < 2:4631558‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 2:2028981‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 2:852614‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 2:2499453‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:230741‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 2:5193140‑M2/11‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:2649023‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:5173017‑M2/12‑1 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1050955‑M2/38‑50 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 2:2313394‑M2/36‑48 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 1:370644‑M2/14‑1 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 2:138465‑M2/14‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACa < 2:5341655‑M2/15‑1 (MQ=255) gggAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAg > 1:4136962/1‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAgg < 2:2748210‑M2/17‑1 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 2:2792400‑M2/34‑49 (MQ=255) attcactgtatttagaacaacatcaatgaatacTAACAATGCCGGACAgg < 2:1256856‑M2/17‑1 (MQ=255) ggAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAgg < 2:3422864/49‑1 (MQ=255) ggAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGa < 1:566226/50‑1 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 2:288977‑M2/31‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:1857380‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 2:3348891‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 2:4303215‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 2:1850459‑M2/30‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 2:3286205‑M2/22‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 2:2983158‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 2:1336187‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:3202877‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:5179567‑M2/29‑50 (MQ=255) gtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa > 2:336031‑M2/27‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACt < 1:4422440‑M2/23‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa < 1:5387218‑M2/24‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:149286‑M2/24‑48 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:85491‑M2/24‑48 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 2:4417830‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:2947431‑M2/27‑1 (MQ=255) ttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg > 1:3476370‑M2/23‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 2:3651438‑M2/22‑50 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:529931‑M2/28‑1 (MQ=255) aTAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAgg > 2:4006531/1‑50 (MQ=255) aTAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAgg < 2:3192572/50‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 1:746626‑M2/29‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 2:243929‑M2/29‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 1:3938050‑M2/29‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 2:1041690‑M2/30‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 2:4494791‑M2/20‑50 (MQ=255) aGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCAt > 1:3209074/1‑50 (MQ=255) aGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCAt < 2:5002909/50‑1 (MQ=255) gCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:2689865/50‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 2:2890033‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 2:407108‑M2/18‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:3355813‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:4230463‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:678412‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 2:1884929‑M2/17‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:1394346‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:989087‑M2/37‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 2:4783337‑M2/39‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 2:4218390‑M2/39‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 2:2601127‑M2/12‑49 (MQ=255) acaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:3045960‑M2/12‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 2:3009837‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:912322‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 2:2458675‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGCACTATCAGGCATTCGTTTta > 2:437888‑M2/10‑49 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 2:3664176‑M2/42‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 2:4755664‑M2/42‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 2:659891‑M2/8‑50 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:2238191‑M2/45‑1 (MQ=255) gtgATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 2:2630702/1‑50 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 2:2655056‑M2/46‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 2:161493‑M2/46‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2039667‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 2:2287934‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 2:1250649‑M2/47‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:5241079‑M2/2‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 2:5351346‑M2/49‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:666699‑M2/48‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:3944294‑M2/48‑1 (MQ=255) aTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 2:3205695/1‑50 (MQ=255) aTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 2:4519428/49‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 2:5178092/1‑50 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 2:2142634/1‑50 (MQ=255) | AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |